RnoALTA0012649-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000008102 | Dph7
Description
diphthamide biosynthesis 7 [Source:RGD Symbol;Acc:1304868]
Coordinates
chr3:2173883-2176447:+
Coord C1 exon
chr3:2173883-2174055
Coord A exon
NA
Coord C2 exon
chr3:2176378-2176447
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGGCTTCTGTCTTCCCCCAGGGG
3' ss Score
12.23
Exon sequences
Seq C1 exon
GGCCAGAGAGCAGCCGTTGAAGATCATTAGCAGTGACTCTAAGGGGCAGCTGCACCTCCTGCTGCTGAGTGAGGGCGCAGCTCAACTACAGCTGCTGGCTTCTTGGCCAGCCCATCACTTTGAGGCCTGGATCGCTGCTTTCAATTACTGGCAGACCGAACTTGTATATTCAG
Seq A exon
NA
Seq C2 exon
GGGGAGATGACTGCCTTCTGAGAGGCTGGGACACTAGGATGCTGGGCAAGCCTGTCTTCACTAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008102-7-7,7-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040027=WD40=PU(20.0=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCCAGCCCATCACTTT
R:
GCTAGTGAAGACAGGCTTGCC
Band lengths:
137-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]