MmuALTA0020492-2/6 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000055835 | Zfp1
Description
zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:99154]
Coordinates
chr8:111658386-111666204:+
Coord C1 exon
chr8:111658386-111658441
Coord A exon
chr8:111666120-111666122
Coord C2 exon
chr8:111666123-111666204
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TAACTGTGGACTTCACCCAGGAG
3' ss Score
3.72
Exon sequences
Seq C1 exon
CTGTGCCTTTGTGCTTCTGTGCCTTCACCCCAACCCAGAAAATGATGGGGTCCCAG
Seq A exon
GAG
Seq C2 exon
GAGTGGGAGCAACTGGACCCCTCGCAGAGGATTCTGTACATGGATGTAATGCTGGAGAACTACAGCAACTTACTTTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055835-7-10,7-9,7-8,7-7,7-6,7-5-2/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(3.2=20.0)
A:
NA
C2:
PF0135222=KRAB=FE(90.3=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCACCCCAACCCAGAAAA
R:
AGTTGCTGTAGTTCTCCAGCA
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types