MmuALTA0020492-6/6 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000055835 | Zfp1
Description
zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:99154]
Coordinates
chr8:111658386-111666204:+
Coord C1 exon
chr8:111658386-111658441
Coord A exon
chr8:111666045-111666122
Coord C2 exon
chr8:111666123-111666204
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCCCTTTCCATCTCCCAAAGCTA
3' ss Score
6.64
Exon sequences
Seq C1 exon
CTGTGCCTTTGTGCTTCTGTGCCTTCACCCCAACCCAGAAAATGATGGGGTCCCAG
Seq A exon
CTAACCACTCTAGAAGGAACTGTGTCATTTCAGGGATCCGTTTCATTCACTGATGTAACTGTGGACTTCACCCAGGAG
Seq C2 exon
GAGTGGGAGCAACTGGACCCCTCGCAGAGGATTCTGTACATGGATGTAATGCTGGAGAACTACAGCAACTTACTTTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055835-7-10,7-9,7-8,7-7,7-6,7-5-6/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(3.2=20.0)
A:
NA
C2:
PF0135222=KRAB=FE(90.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCTTTGTGCTTCTGTG
R:
CCACTGAAAGTAAGTTGCTGTAGT
Band lengths:
138-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types