MmuINT1035460 @ mm10
Intron Retention
Gene
ENSMUSG00000055835 | Zfp1
Description
zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:99154]
Coordinates
chr8:111658386-111666204:+
Coord C1 exon
chr8:111658386-111658441
Coord A exon
chr8:111658442-111666060
Coord C2 exon
chr8:111666061-111666204
Length
7619 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AAAGCTAACCACTCTAGAAGGAA
3' ss Score
-2.91
Exon sequences
Seq C1 exon
CTGTGCCTTTGTGCTTCTGTGCCTTCACCCCAACCCAGAAAATGATGGGGTCCCAG
Seq A exon
GTGAGTTGTCTGCATAGTACTCATTTGGTGTTTCATTTCACTCTTGGAATGTTATATTTATAGAAAATGAACCAGAAAGCATAATGAGTTAGATCAGGGCTAGAAAGCCCTTCCTGTACCTTAATGTGGATCATAGTGGGGTTTGCCCCACACCAGTGCTATGAAGGGCAGAGACAGGAGGATTGCTGAAGCTTTCTAGAGTCTTAACTCCATGGTCAGTGAGAACCCCATCTGCCCTTGACATTCCGGGGAGGACCTCATGTTTTAAGGGGCGGCAGAGGCTCTTGAGGGACATTGTTTTAGTATCTGTACCTTAGATAATCACTGATCATTGCTGTTACATTATATAATAAAGAAAATAAGGAAGGAAACAAAAACACATTCTTAACAAGATATGGCAGAAACACTCAAGTCAATCAAAATCTCTTCTGTAGCTGGTCATGGAGGCCTTAGCTGGTATTTAGCACTGTTTTCCTCCACTCTCAGCCAGCAGGCCGCGGCTCTCTTCCTGGAGGAGTGACTCATGCTTCCATTCCTGAGGGGAATGTCCCTCTGTCATCCTGCCTGCCTTAGGTTGGGGTAGTTTCCCACGGACTTTCATCACAGGACATGGTAGCAACAAGAGAGGCTCTAAAGGACCTCCTACACTCCAGATAAAATCTTTCTTACCTCCACTGAGGAGGAGCAATACAATTTCCTCTTGGTAATCTGGATAAGTCACCTCTCTTAACTCTTCTTTCATAGTCTGCTGGCTTCGGGGCATCAGAAGCCTTAAGGAGGAAGTCTGCGCTTCAGTCGAGTGAGATGTTTGTTGTGTCTCATTGCTAGAGAACTTCCCCCAACTGGAACCAAAACTTCTACACCAGCAGAACTTAAGGTCATAGGAACAGGAAGCAAAAAAATTCCTAGTGGGTCACTGGGGTGACAGTAAGTGGAACTATTCCATTTTCCACTCCTTGATTCCTGGACCTATGGATCTTGGCTTTGGGAAAAAACCTAGCATATATTGGACACTGATTCAAAGACAGAATCAGACACTGATTCAAAGCATACACTCTCTTTAGGAGAGCCCTGCCCTAGCCCTCCATGCTGCTGCTACCTAATTGGCACTATAACTGTGTCTCCAAAGGCCATTCCATCTTTCTATCAGGCCAGCTGCTTCAGGATGGTGGGGAACATGGTAAGACCAGTAGATTCCAAGTCATGGGCCCATTGTCATGCTTCTTTGGCTGTGAAGTGAGTTCCTTAGAAACAATACTGTGTGGAATACCACGATGGTGGATAAGGCATTCTCCACAGATGGTGGTTTTGACAAAAGCCTTATGTGCAGGAAAGGGTACATCTATAACCAGAATAAGTATCAATTCAAAGCATTGTCCTTTTCACAGAGGAAGTGGTTCAGTGTAATCAGTCTGTCACCAGGTCACTGGCTGGTCACCCCAGGTAATTGTACCATATCTTGGGCTCCGTATATTGGTCTCTGCTGTTGGCTGTGCTCAGCAGCAGCTGTAGCCAGGTCAGCCTTGATGAGTGAAGTCCGTGGTGAGGTATGCACCATAGCCACTTTGTTCATGTGCCCTTAGGGGAATGACAGGGTTGGCTGGGGAAAGAGGCTGACTGTCCACAGCACAGGTCATCCTATCTGCTTGGTTACTGAATGCCTCCTCTGCTGAAGTCACCTTTTGATGGGCATTTACATAGAACACAAAAATCTTCACACCCTTTACCCATTTGGAGAGGTCAGTCCACATTCTTCTTTCCCAGTGTTTTTTTCTCACCATCTCTTCAACCATGCTCTTTCCAAGTCCCTGACCATCCAGCCAATCTATTGGATACAGCCCATGAATCAGTGAACATGGCCATTTTTCTTCCCAAACAAAATCTATGATGGCATGTACTGCCTGACGTTGTGCCTACTGTGACAATTTGCCTTCACTGGTGTCTTTCAGGGTTGTCCCAGAGGGGGTCGTAATGCTGCAGCTGTCCACTTCTGGGTGGTGCCTGCATAAGGTGCAGATCCATCAGTAAACCAGGCCCTAGTCTTCTCTTCAAACCAATCACAGGGCACATGACATGAGACTATAGGCGCATGCCTGGCAGTAGATAGTATTGTAATGAGAGTAGAAACCATAGACATTTGGAGAACTTCATGTACCTTGTTTGTGCCTTCAGGACCTGCTCAGGCCTGATCGTGTGTAGACCACTTCCATTTGATAGTGGATTGCTGCTGTGCCTGCCCTACTATGGCACAGTGGGGCAGATAACACCCAGCTCATGATAGACAGCAGCTCAGGGCGCATGGTAACTTGGTATCCCTTTGTCAGATGTTCAGTTTTCACTAAGGCCAATTGCAGACCAACAGCTGTCTCTCAAAAGAATAGTTGTCTGCAGATAATGGTAGGTAGAGCCTTGCTCCAAAATCCCAAATGTTTCTCCTGTGATTCACCTACAGGGGCCTGCCAGAGGCTCCAGACAGCATCCCTGTCTGCCACTGACAACTCATATACCATCAGGTCTGCTGGGTCATATGGTCCAAGTGGTAGGGCAGCCTGGAACTGTTGAAGAGCCTTGTGTTCCAGGCCCCACACAAAGCTCGCAGCTTTCTGAGTCACCCGATACATGAGTGGGAATAATCACCCAAGTGAGGAGTGTGCTGTCTACAGGATCCAAATAGACCCTCTAAGCCCTGTGCTGCCTCTTGGTGGTGGGAGGGGCCGCTGCGTAATGCATCCCTAACCTTAGAACCGATGTCTCTGCTGGCCTCGCACCCCTAGACTCTCAAGAATTTCACTGAGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTTAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAATCTTGTCTCAAAAACAAACAAACAAACAAGAATTTCACTGAGGTAGAAGGCCCTTGGATTATAGTTTATTTTCCATCTCTGATGTATGTATGTATTACCAACAAGTCTGAAGTGGTTGCTACCTTCTGTTCACTCTGTCTAATCAGCATGTCCTCAATATGGTGAACCGATATTTTGTGAAATTGATGATCAAGATCCAATTGAAAGCTTCAGGCAGGCATGGTGGCACATCTAATCTCCGTGCTTTGGAGGCAGCTGGGTGTGAGTTTGAGGCCAGCCTGGTTTCCAGAGCAAATTGCAGGACAGTCAGGCTGTACAGAGAAACCTCTGACTCGGGTGCTGGAAATTCAGCTGAAAAGAAATTGTTTTTGGTGATCTTATGGACAGGTACTAGGAAAAGGGGCATTTAATAGACCAATAATTGCAAACCGTGTGCTAGGAGATGTGTTAATCTGCTCAGGGACACCACCCCTGCCTGCATCCTTCAAGTCCTTAATGGCGGCACACATTTCTGCAATTCCTTCAGGATGTGCTACTGTTTTTGATTTACTATTTTCCCTGACCGAGGCAACTCTAAAGGCTTCCAGTTAGCCTTTCCAACAGTAATAGCTCTCATTCCACAGGTCAGGGAACCAGTGTGAGAATTCTGCCAACTTCTAAGTATATGCACCCCAGTTATACATTCTGGGACTGGGGAAATAACCAGAGGATGAGTTTGGGGACCCAGTTGGACTTCAACCAAAACTCCATGAATCATCTGACCTCCATAAGCTCTAACTTTAATTGGAGGACAACAATGTTTTTGGGGTTCCCGCAATCAGCAAGAATCAGTATCCACCAATAGACCCAGATAATCTGATTGCTTCCTTTCCCCCACTGTACAGTTCCCCTTGTAAAAGGCCATAGGTCCCTCTGGGGAACGACTGGAGAAAGGCTAAGAGTAACATTTTTAGGCATTTTATTAAGATCCTTCATCCATGGACTTCTGGGTCTGCAAACTGGCTCAAGTATGGGAATCAGTTCACAGGCAGAGATCCCCTTTTGCCATGATCCAGTGTAGCCTTTCTTTTATTTGTTAAGAGATTTTCCATTTGTACAGCTGCTTTAAAAAAAGAAAAAAGAAAAAAGAATGCAGTAGGCTTCTTACCATTTCATGCCAGAAGTACCATGGTTGATTAACCAGCACCAAAGGTCCATGAGAGTTATGCCATTATAAAATTCACCACAGATTAGACCTATATGGACATTGCTTTGCCTGTGCTTCCCATTATAACTACAGTCATCTTGTCTTTGGTGACTCAGTGCTGCCACCTGCTGCTTCTGCTTGGGGGCCTGATTAGACTCAGGCCTGGTCAACTTGCATTCAATTCATCCAACTGAGCAGCAACATCCCCAACCCTAAGGCCTGGCGCAAGGAAAGGGGCAACAACAAAGCTTATCAAATGTGCTGGTGCCCCTCTTGCCATTTTGCATCTTATGGGATTAGTGAAGGACATTCGTGATTAACTGAGTTACCAATAATGCGTTGATATCACACTAAAAAAAAGCACGTCCCCTTGGAGTTATGTCGCCAGAGTGAGTGCAGGTGGGGTTCTCTCGGCCTGCCTGTCCCTGTGTGTGTGTAGAGTCTGTATGTGCAATATGTGTCTTATGTGTGGGAGTGGTCTGTCCCTAGCAAAGGGTTTGCTCTGTCTCTATTGGGCAGCCCAGAAAGCACTACATGGCAGTGGGGAACTTTACTGAAATCTAAGTTTTACAAGGGATTCAGTCCCTGAATTGAGCTGACTCCAGCTGACAGATAACACATTAACTAGAGATTATGATTATTTAACATTATGGTGGGTTTTAGGGAGTATTTGCTGCTTTCGGCAGATGGTACACATGCATTGCCCTGGGTCGGGGCATTTAAAATACATAAGATTAGAGCTGTGCATTAGCTCAGGTTGTAAAAGTTGATGACTTAGTACACCCAAGGCATCTAATGTTTGTTATCACATTGTTCTCTTAAAGGCAGGCTAAAGTTCGAGGGTACAGTAACATTGACAGTCTTAAATTTTAAGGGACCTTAAAATATATTAGCTGTGAAGTTCCAGTCTCTTAGAATGTAAGATATTCTCAGAATATTGCATTGCCATGTGTCCTGGTGTATTGGAGCCCAGAAGAGGGTATCTGATTCCCTGGGACTGGGGTTACAGTGGTCAGTTGCCAAGTGGGTTCTGAGAATCCAGCTGGGGTCCTGTGAAAGAGTAGCCAGTGCTCTTAACCACTGAGCCATCTCTCAGCTCTGTCAGATAAGTGTTTTTCAAAGATGTTCTTAGTCTGTACTGTATTTTGGGGGTTTTTTTGGTTGTTTTTTGATTACTCAGGGGGTTAACTTTGGTTTTGTTTTTTGGGTTTGTTTGTATGTTTGTTTCTAGACAGGGTTTCTCTATGTAGCCCTGGCTATCATGGAATTCTCTACTCTCATAGACCAGGCTGGCTGCGAACTCAAGATCCTCCTACCTCTGCCTCTCTTGTGCTGGGATTAAAGATGTGCACCACCACCTGGCTGGGTTTGTTTTGTTTAGTAGTATTGTGGAGGTGAGGGGGAGAGAATCCTGCTGTATAGCTGGTGTTGACATGGAAACTGTGTAGTTGGGGCTTGCCTTGAAATCATGGTACTACCTCAGCTTCTCAAGTTCTGGGATTATAGGTGTGCACCAGCAGAGCAAATGACATCTTTTGGATTTATTAGAGCATAAAACTCTCTCATTCTCATTAATGTTGTAAGGGGCATGGTGTCCACACCCTTAGCCCAGCAGCTCAGGAAGCAGAGGCAGGTAGCCTCTGTAAATTCAGCTCCAGATAGTGCTACATAAGGAGACGGTCTTAAAACCCGTTTTGTGTGTGCTACGGCATCTGAGCCTTGACTTTCAGGAGTTGGTTCTTCCATCATGTGAGTTCCAGGGATTGAACCCAGGTCGTCAGCATTGATGACTGGCTTACCACCGAGTCAAGCTGCCAGCCCTCTTTCCTTATGCCTTGTGTAATAACAGTGTACACAGTAAAGTACTAGGGAGGGATATACTCTGCTAATAGTGTACTTGCCTTGCATCCTTGAGGCCTCGGGCTTGATCTCTAGTACCCCCACCCCAAACCCAGAAAAGAAACGGTCTGCAGTGTGAGCGCTTGTGCATACCTGGGTTAAGAAGCGGCTGCCAGCTCCCTGCGATGCCAGCTCAGTTGAGCCCTTCTTGGGGAGTTGGGTTTTCTTAAGTTACATTTTAAAAGTTTTGTGCACATGGTTGGGGGCTTAGGGGATGTGTGTCATAGTGTACTCCTGGAGGTCGGAGGACAACTTTCAAGGGTCAGTTTTCTCCACCACATGGTAAGGAACTCAGTCTTCAGGCTTGACAGTAAGCCCTTTTACCCAGGTAACTGTCTCATTGGCCCTTTGTGTTCAGATTGCATTAGCTGGTGGCAGTATAAGGGATAGTCTTACTGGCAGACAGCAATACTTACCTAAGCTGTGGCTCATAGTCTAGTTGTAGCTTTCCCGAAAGCTCACAGAACCCTCACTGAGAAAGTCACTGGCAAGGTCAGGATAGGAAGTACAGGGCTCAATGCTGCTGGTGTGTCAGGCCGGGTCAGAGTGTGCATCCAGTGCTCAGTGTTTGACAGCACTGTTTGATGAGGCAGATGCTCTCTATCTTCTGCTTCTGGCTCTACCACTTGACTGCCAGCTCTCGGGAGTTGGTTAAAAGCAGGCAGATCTGTTAGATGGATGGAGTATCCTTACCTGATCCAAGGCATCTTGGTGTAGAAGGAGGAGAGAAATGTCCTTAGTTAGCACATGTCCAGGACAGACCAGAGCAAGTACATGTAAGAATCCGCACATAGAGCCGGTCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGAGAGGCAGAGGCAGACGGATTTCTTAGTTCGAGGACAGCCTGGTCTACAGAGTGAGTTCCAGGATCAGCCAGGACTATACAGAGAAGCTTTGTCTTGAAACCCCCCCCCCCAAAAAAAAAGCATCTGCACATAGGCTGAGTTAAAATCTGGTACAGTGGCATCGAAGATCTTGATGCTAGGCCTTAAAATGCCTGCTTTCAAATTCCTCCCAACCATACTAGACCAGCCTGGTGTCACTAGAGTAGCTGCTGTTTTGCAAACTCTGGACACTTCCCTCGGCTCTCCTTTTTTGAATTATTGTTTTATTGCTGCTTTTTCCTTTTTTTTTAAAGACTGGGTCATTTTATGGCAGTGGTTCTCAACCTATGGGTCTCAAACCCTTTTGTGGGTCACATACCAGGTACTTAGATTTTATAACAGTAGCAAAATTACAGTTGTGCCGTAGCAACAAAAAAACTATGGTTTGGGGTCACCACAACATTTTCCTTTGTCATTTGATGTAGGCCTCTGCATCAGTGTGGATTTGTCTCTTTCTAGCTTTTATTTTTGATCCCTGACTAGATTGAAATGTGTTATGTAGACCAGGCTGGCCTCAAACTCAGCTAGATCCCCCTGCCTTTACCTCCCAAGTGCTGGGGTTCAAGGTGTGTACTACCACACCTGTCCTGAGTAATGTCCTCACTGTTGAGAGCCGTGACAAACACCGGACAAGTAGCACAGTTGGGACTGTGAACATGGCCAGAGTAACTTTCCCTGTGCCCTTTCCATCTCCCAAAGCTAACCACTCTAGAAG
Seq C2 exon
GAACTGTGTCATTTCAGGGATCCGTTTCATTCACTGATGTAACTGTGGACTTCACCCAGGAGGAGTGGGAGCAACTGGACCCCTCGCAGAGGATTCTGTACATGGATGTAATGCTGGAGAACTACAGCAACTTACTTTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055835:ENSMUST00000212072:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(3.2=20.0)
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types