MmuALTA1020919-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108518690-108519450:+
Coord C1 exon
chr6:108518690-108518829
Coord A exon
chr6:108519285-108519416
Coord C2 exon
chr6:108519417-108519450
Length
132 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
GCACCATCTCTCATCTCCAGGAG
3' ss Score
9.35
Exon sequences
Seq C1 exon
AGCTGCTCCCTGCCGAAGAAACGGAACAGGATAAGGAACACACGTGTGAGACCCTGCTCATGTGCATCGTCACTGTTCTGAGTCACGGGCTGCGGAGTGGGGGAGGGGTAGGAGACGTGCTCAGGAAGCCATCCAAAGAG
Seq A exon
GAGCCTCTGTTTGCTGCAAGGGTGATCTACGACCTCCTCTTCTTCTTCATGGTCATCATCATCGTCCTGAACCTGATTTTCGGGGTCATCATTGACACCTTTGCTGACCTGAGGAGTGAGAAGCAAAAGAAG
Seq C2 exon
GAGGAGATCTTAAAAACCACGTGCTTCATCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-150-113,150-112-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.9=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(11.3=51.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCCTGCCGAAGAAAC
R:
GCAGATGAAGCACGTGGTTTT
Band lengths:
171-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types