RnoALTA0019903-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140549380-140550016:+
Coord C1 exon
chr4:140549380-140549519
Coord A exon
NA
Coord C2 exon
chr4:140549851-140550016
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CCACTCTCTCTCATTCACAGGAG
3' ss Score
10.02
Exon sequences
Seq C1 exon
AGCTGCTCCCTGTGGAAGAAACGGAACAGGATAAGGAGCACACGTGTGAGACACTGCTCATGTGCATCGTCACCGTTCTGAGTCACGGGCTGCGGAGTGGGGGCGGAGTAGGAGATGTGCTCAGGAAGCCATCCAAAGAG
Seq A exon
NA
Seq C2 exon
GAGCCTCTGTTTGCTGCAAGGGTGATCTATGACCTCCTCTTCTTCTTCATGGTCATCATCATTGTCCTGAACCTCATTTTTGGGGTCATCATCGACACCTTTGCTGACCTGAGGAGTGAGAAGCAGAAGAAGGAAGAGATCTTAAAAACCACGTGCTTCATTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-96-99,96-98-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.9=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(11.3=51.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACTGCTCATGTGCATCG
R:
TCACCCTTGCAGCAAACAGAG
Band lengths:
117-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]