MmuALTA1022167-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000030922 | Lyrm1
Description
LYR motif containing 1 [Source:MGI Symbol;Acc:MGI:1921169]
Coordinates
chr7:119916141-119935318:+
Coord C1 exon
chr7:119916141-119916285
Coord A exon
chr7:119931497-119931499
Coord C2 exon
chr7:119931500-119935318
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CTGTTTCAATTTCTTTACAGTAG
3' ss Score
7.68
Exon sequences
Seq C1 exon
ATCCATCTGCCTCCAATGGGTCTCACCGCACGACGAGGTCGGGGACTTCAAACCCAGGAAAAACTGAGAAAACTTTCCAAACCAGTGTATCTGAAGTCTCATGATGAAGTTTCCTAACAAAGAGGACACTTTACTTTTGAGAATG
Seq A exon
TAG
Seq C2 exon
AACATGGACAGGAGGGACAGCAGGAGACGCCTATCTTTGTCATCAGTCACTCTGCCTCCATAATTACATTCACCTGGGGGCAACCGACAGCAGAAGAAGCTGAGCATAAGTAAGGTCGTGAACATGTACATTAGCTTTGAGCAGCAGTTTCTTCTAACCAAGAAACCCTATTGGCACACAGGTGGTCCAAGGACACAGGGTTGCTGGTACCATACCCCCAGCCTTGATTGGAAAGGTCTTTTCGGAATCATGGTGGTTATCAAAAATAATACATGTTCAGAAAGAGAGTCGATCTGGAAGAAACAATGATATAATCATCAAAGATAACTATTCATGTGAAGGAATCTTTCAGGCATTCATCTTCCCAAGTATATGTGTTTGTGTATGTATGTGTATGTATATACGCATATATGTATATATAAAAAATGATTTAAGCTGAAAATTCTGGAATGAGATGGTCCTGAGTACTATCCTGACAGTAGCTTTGGTCAGAGAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030922-17-20,17-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAACCAGTGTATCTGAAGTCTCA
R:
AAGATAGGCGTCTCCTGCTGT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types