MmuEX6013669 @ mm10
Exon Skipping
Gene
ENSMUSG00000052273 | Dnah3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:119928703-119931572:-
Coord C1 exon
chr7:119931418-119931572
Coord A exon
chr7:119930102-119930269
Coord C2 exon
chr7:119928703-119928845
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATTGAAGATTTCCTTTCCAGTCT
3' ss Score
3.16
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
GTGAATGTAATTATGGAGGCAGAGTGACTGATGACAAAGATAGGCGTCTCCTGCTGTCCCTCCTGTCCATGTTCTACTGTAAAGAAATTGAAACAGATAACTATCACATTGCTCCTGGAGATGCTTATGTCATCCCCCCCTATGGCTCCTACCAG
Seq A exon
TCTTACATTGAGTATCTCAGGACCCTCCCCATCACAGCACACCCTGAAGTATTTGGTCTCCATGAGAATGCTGACATCACCAAGGACAACCAGGAAACCAACCAGCTCTTCCAAGGAGTGCTGCTGACCCTGCCGAGACAGTCCGGAGGGAGTGGGAAGTCTCCTCAG
Seq C2 exon
GAAGTGGTTGAGGAGCTGGCCCAGGATATACTCTCCAAGCTTCCCAACGACTTTAACCTGGAGGAGGTAATGAAGAAGTACCCCGTGGTCTATAAGGAGTCTATGAACACTGTTCTAAGGCAGGAGCTCATCAGATTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'71-76,'71-74,72-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.2=100)
A:
PF0302810=Dynein_heavy=FE(7.7=100)
C2:
PF0302810=Dynein_heavy=FE(6.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATAGGCGTCTCCTGCTGT
R:
GCTCCTGCCTTAGAACAGTGT
Band lengths:
246-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types