RnoEX0001344 @ rn6
Exon Skipping
Gene
ENSRNOG00000054843 | AABR07005593.1
Description
NA
Coordinates
chr1:189695488-189698909:-
Coord C1 exon
chr1:189698755-189698909
Coord A exon
chr1:189697114-189697281
Coord C2 exon
chr1:189695488-189695630
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATTGAAGATTTCCTTTCCAGTCA
3' ss Score
3.22
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGGAATGTAATTATGGAGGCAGAGTGACTGACGACAAAGACAGGCGTCTCCTGCTGTCCCTGCTGTCCACATTCTACTGTAAGGAAATTGAGACAGATCACTACTACATTGCTCCAGGACAGCCGTACTTCATCCCTCCCCACGGCTCCTACCAG
Seq A exon
TCATACATTGAGTACCTCAGGACCCTCCCCATCACAGCACACCCTGGAGTATTTGGTCTCCATGAGAATGCTGACATCACCAAGGACAACCAGGAAACCAACCAGCTCTTCCAAGGAGTGCTGTTGACTCTGCCAAGACAGTCTGGAGGGAGTGGGAAGTCTCCTCAG
Seq C2 exon
GAAGTGGTTGAGGAGCTGGCCCAGGATATACTCTCCAAGCTTCCCAAAGACTTTAACCTGGAAGAGGTCATGAAGTTGTACCCTGTGGTCTATGAGGAGTCTATGAATACCGTCCTAAGGCAGGAGCTCATCAGATTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054843-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCTGCTGTCCACATTC
R:
TTGAATCTGATGAGCTCCTGCC
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]