GgaEX6013288 @ galGal3
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15701663-15704568:-
Coord C1 exon
chr14:15704414-15704568
Coord A exon
chr14:15703524-15703691
Coord C2 exon
chr14:15701663-15701805
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTAAATGTTTCTTTTACAGTCT
3' ss Score
9.7
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGGAATGTAACTATGGGGGGAGAGTAACAGACGATAAAGACAGGCGGCTTCTTCTGTCCCTTCTGTCTACAGTCTACAACAAGGATATAGAGCAGGACAAGTACATGCTTGCACCTGGCGGTGACTACTATATCCCACCACATGGTCCATATGAG
Seq A exon
TCTTACATTGAATACCTAAGAAGCTTACCAAGTGTGACACACCCTGAGGTGTTTGGGCTTCATGAGAACGCAGACATTACCAAGGATACCCAGGAGACTAACCAGCTTTTCAGCGGAGTGCTCCTGACTTTGCCTAGAGTGGCAGGGGGAGGTGGCAGATCTCCTCAG
Seq C2 exon
AAAACTGTTGCAGATTTGGCACAGGACATCCTATCCAAATTACCACGTGACTTTGACGTTGAGGAGGTGATGAAGATGTACCCGGTGCTTTATGAAGAGTCCATGAATACAGTCCTGAGGCAGGAGCTGATTCGATTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350-'66-68,'66-67,67-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.2=100)
A:
PF0302810=Dynein_heavy=FE(7.7=100)
C2:
PF0302810=Dynein_heavy=FE(6.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGACAGGCGGCTTCTTCTG
R:
ATCGAATCAGCTCCTGCCTCA
Band lengths:
256-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]