HsaEX6042683 @ hg38
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:20941401-20948637:-
Coord C1 exon
chr16:20948483-20948637
Coord A exon
chr16:20944496-20944663
Coord C2 exon
chr16:20941401-20941543
Length
168 bp
Sequences
Splice sites
3' ss Seq
ACTGAAGATTTCCCTTCCAGTCC
3' ss Score
4.77
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGGAATGTAATTACGGAGGCAGAGTGACTGATGACAAAGACCGGCGTCTCCTGCTGTCACTTCTGTCCATGTTCTACTGTAAGGAAATTGAGGAGGACTATTACTCCCTCGCTCCTGGAGACACTTACTACATCCCTCCTCATGGCTCCTACCAG
Seq A exon
TCCTATATCGACTATCTCAGGAATCTCCCCATCACAGCCCACCCAGAAGTGTTCGGCCTCCATGAGAACGCAGACATCACCAAAGACAACCAGGAAACCAACCAGCTGTTTGAGGGGGTCCTGCTGACCCTCCCTAGACAGTCAGGAGGAAGTGGCAAGTCCCCTCAG
Seq C2 exon
GAAGTGGTTGAGGAGTTGGCACAAGACATTCTCTCCAAGCTTCCCAGAGACTTTGACCTGGAAGAGGTCATGAAGTTGTACCCCGTGGTCTATGAAGAATCCATGAATACCGTCCTAAGGCAGGAGCTCATCAGATTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'83-102,'83-95,93-102=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.161 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(13.1=100)
A:
PF0302810=Dynein_heavy=FE(14.1=100)
C2:
PF0302810=Dynein_heavy=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCAAGGTCGCACCATT
R:
CGCGATCTCGGCTCACTG
Band lengths:
194-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains