DreEX6096482 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39613823-39616478:+
Coord C1 exon
chr24:39613823-39613980
Coord A exon
chr24:39616092-39616259
Coord C2 exon
chr24:39616336-39616478
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATGATTGCATTTATATGTAGAGC
3' ss Score
4.73
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GAGAGTGTAATTATGGTGGGAGGGTGACTGACGATAAGGACCGGAGACTGCTGATGTCTCTCCTCTCCATCTTCTACAGCTGGCAGCTCATTCAGCAGGACCAGTATCGTGTGTGTGAGGGAGATCTGTATTATGTGCCTTCACATGCTCCTTACCAG
Seq A exon
AGCTATGTGGACTACATCCGCAACCTGCCTATCAGTGCTGAGCCTGAGGTCTTCGGCCTGCACAGCAATGCTAATATCACCAAAGACAACCAGGAAACCAACCAGCTGTTAGACGGAGTGCTGCTAACTCTACCAAGACAAACCAACAGCGGAGCCAAATCACCACAG
Seq C2 exon
GAAGTCGTGGATGAGCTAGCAGAGGGAATGCTGGCCAAACTCCCCTGTGATTTTGACATAGAGATGGTGACCAATAAGTATCCTCTTTTATATGAGGAGTCGATGAACACCGTCCTACGGCAGGAGCTCATTCGCTTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'51-53,'51-52,53-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.3=100)
A:
PF0302810=Dynein_heavy=FE(7.7=100)
C2:
PF0302810=Dynein_heavy=FE(6.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAGGGTGACTGACGATA
R:
ACGGTGTTCATCGACTCCTCA
Band lengths:
256-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]