BtaEX6109056 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:18849130-18852992:-
Coord C1 exon
chr25:18852838-18852992
Coord A exon
chr25:18851846-18852013
Coord C2 exon
chr25:18849130-18849272
Length
168 bp
Sequences
Splice sites
3' ss Seq
ACTGAAGATTTTCTTTCCAGTCG
3' ss Score
3.79
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGGAATGTAATTATGGAGGCAGAGTAACGGATGACAAAGATAGGAGGCTCCTGCTATCCCTTCTGTCCACGTTCTACTGTAAGGAAATCGAGCAGGACCATTACTTTCTTGCTCCTGGAGACACTTACTACATCCCTCCTCATGGCTCCTACCAG
Seq A exon
TCGTATATCGACTATCTCAGGAACCTCCCTATCACAGCCCACCCAGAAGTGTTTGGCCTCCATGAGAATGCTGACATCACCAAAGACAACCAGGAAACCAACCAGCTATTTCAAGGGGTGCTCCTGACCCTCCCTAGGCAGTCAGGAGGGAGTGGCAAGTCCCCTCAG
Seq C2 exon
GAAGTGGTTGAGGATCTGGCCCAGGACATACTCTCCAAGCTTCCCAATGAATTTGACTTGGAGTTGGTCATGAAGTTGTACCCTGTGGTCTATGAAGAATCCATGAACACTGTCTTAAGGCAAGAGCTCATCAGATTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'58-60,'58-59,59-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.2=100)
A:
PF0302810=Dynein_heavy=FE(7.7=100)
C2:
PF0302810=Dynein_heavy=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTCCTGCTATCCCTTCTG
R:
TGAATCTGATGAGCTCTTGCCT
Band lengths:
250-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]