MmuEX6013670 @ mm10
Exon Skipping
Gene
ENSMUSG00000052273 | Dnah3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:119926403-119930269:-
Coord C1 exon
chr7:119930102-119930269
Coord A exon
chr7:119928703-119928845
Coord C2 exon
chr7:119926403-119926607
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCTCGTGTCTGTACTTAAAGGAA
3' ss Score
6.25
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
TCTTACATTGAGTATCTCAGGACCCTCCCCATCACAGCACACCCTGAAGTATTTGGTCTCCATGAGAATGCTGACATCACCAAGGACAACCAGGAAACCAACCAGCTCTTCCAAGGAGTGCTGCTGACCCTGCCGAGACAGTCCGGAGGGAGTGGGAAGTCTCCTCAG
Seq A exon
GAAGTGGTTGAGGAGCTGGCCCAGGATATACTCTCCAAGCTTCCCAACGACTTTAACCTGGAGGAGGTAATGAAGAAGTACCCCGTGGTCTATAAGGAGTCTATGAACACTGTTCTAAGGCAGGAGCTCATCAGATTCAACAG
Seq C2 exon
GCTGACCAAAGTGGTTCGCAGAAGCCTTATTGATCTTGGCCGAGCCATCAAAGGACAAGTCCTAATGTCCTCAGAGCTGGAGGAAGTCTTCAATAGTATGCTTGTGGGTAAAGTGCCAGCCATGTGGGCAGCCAAGTCCTACCCATCACTGAAGCCCCTGGGGGGCTACGTGGCTGACCTATTGGCCCGCCTGACCTTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'72-77,'72-76,73-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.7=100)
A:
PF0302810=Dynein_heavy=FE(6.6=100)
C2:
PF0302810=Dynein_heavy=FE(9.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCAAGGAGTGCTGCTG
R:
CAATAGGTCAGCCACGTAGCC
Band lengths:
247-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types