DreEX6096481 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39616092-39619593:+
Coord C1 exon
chr24:39616092-39616259
Coord A exon
chr24:39616336-39616478
Coord C2 exon
chr24:39619389-39619593
Length
143 bp
Sequences
Splice sites
3' ss Seq
AAGATTGTCGGTGTTCACAGGAA
3' ss Score
5.37
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
AGCTATGTGGACTACATCCGCAACCTGCCTATCAGTGCTGAGCCTGAGGTCTTCGGCCTGCACAGCAATGCTAATATCACCAAAGACAACCAGGAAACCAACCAGCTGTTAGACGGAGTGCTGCTAACTCTACCAAGACAAACCAACAGCGGAGCCAAATCACCACAG
Seq A exon
GAAGTCGTGGATGAGCTAGCAGAGGGAATGCTGGCCAAACTCCCCTGTGATTTTGACATAGAGATGGTGACCAATAAGTATCCTCTTTTATATGAGGAGTCGATGAACACCGTCCTACGGCAGGAGCTCATTCGCTTCAACAG
Seq C2 exon
GCTGTCCAAAGTGGTGCGTAGCAGCTTGCTAAACACCCAGAAGGCACTTCGGGGACAGGTTGTGATGTCATCTGAGCTGGAAAACGTCTTCAACAGTCTTCTTGTTGGTAAAGTGCCAGCCATGTGGGCTGCAAAGTCCTACCCTTCCCTCAAACCCCTCGGCAGCTACGTGTCCGACTTCCTGGCCAGACTGCAGTTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'53-54,'53-53,54-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.7=100)
A:
PF0302810=Dynein_heavy=FE(6.6=100)
C2:
PF0302810=Dynein_heavy=FE(9.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCAGGAAACCAACCAGCT
R:
GAGGGGTTTGAGGGAAGGGTA
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]