HsaEX0020187 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:20947971-20955985:-
Coord C1 exon
chr16:20955818-20955985
Coord A exon
chr16:20952723-20952865
Coord C2 exon
chr16:20947971-20948175
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGCCTGCATTTTAAGGAA
3' ss Score
8.99
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
TCCTATATCGACTATCTCAGGAATCTCCCCATCACAGCCCACCCAGAAGTGTTCGGCCTCCATGAGAACGCAGACATCACCAAAGACAACCAGGAAACCAACCAGCTGTTTGAGGGGGTCCTGCTGACCCTCCCTAGACAGTCAGGAGGAAGTGGCAAGTCCCCTCAG
Seq A exon
GAAGTGGTTGAGGAGTTGGCACAAGACATTCTCTCCAAGCTTCCCAGAGACTTTGACCTGGAAGAGGTCATGAAGTTGTACCCCGTGGTCTATGAAGAATCCATGAATACCGTCCTAAGGCAGGAGCTCATCAGATTCAACAG
Seq C2 exon
GCTGACCAAAGTGGTTCGGAGGAGCCTCATCAATCTTGGCCGAGCCATCAAAGGACAGGTCCTGATGTCCTCGGAGCTAGAGGAAGTCTTTAACAGCATGCTTGTGGGTAAAGTGCCAGCCATGTGGGCAGCCAAGTCTTACCCATCACTGAAGCCTCTGGGGGGCTACGTGGCTGACCTGCTGGCCCGCCTGACCTTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'62-64,'62-63,63-64
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.7=100)
A:
PF0302810=Dynein_heavy=FE(6.6=100)
C2:
PF0302810=Dynein_heavy=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGTTCGGCCTCCATGAG
R:
CTGGCACTTTACCCACAAGCA
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)