GgaEX1020188 @ galGal3
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15700895-15703691:-
Coord C1 exon
chr14:15703524-15703691
Coord A exon
chr14:15701663-15701805
Coord C2 exon
chr14:15700895-15701099
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCATTTACTGCCAATTTCAGAAA
3' ss Score
7.47
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
TCTTACATTGAATACCTAAGAAGCTTACCAAGTGTGACACACCCTGAGGTGTTTGGGCTTCATGAGAACGCAGACATTACCAAGGATACCCAGGAGACTAACCAGCTTTTCAGCGGAGTGCTCCTGACTTTGCCTAGAGTGGCAGGGGGAGGTGGCAGATCTCCTCAG
Seq A exon
AAAACTGTTGCAGATTTGGCACAGGACATCCTATCCAAATTACCACGTGACTTTGACGTTGAGGAGGTGATGAAGATGTACCCGGTGCTTTATGAAGAGTCCATGAATACAGTCCTGAGGCAGGAGCTGATTCGATTCAACAG
Seq C2 exon
GCTTACTCAGGTGGTTCGAAGCAGCCTTGTTAATATTGGCAAAGCCATCAAGGGCCAAGTGTTGATGTCGGCTGAACTTGAAGATGTTTTCAACAGCATGTTAATGGGAAAAGTGCCATCAATGTGGGCTGTCAAGTCCTATCCGTCCCTGAAGCCCCTGGGGAGCTACGTGTCCGATCTGCTTTGTCGTTTGGGCTTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350-'67-69,'67-68,68-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.7=100)
A:
PF0302810=Dynein_heavy=FE(6.6=100)
C2:
PF0302810=Dynein_heavy=FE(9.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCATGAGAACGCAGACA
R:
AGCCCACATTGATGGCACTTT
Band lengths:
243-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]