MmuALTA1027225-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035370 | Adat3
Description
adenosine deaminase, tRNA-specific 3 [Source:MGI Symbol;Acc:MGI:1924344]
Coordinates
chr10:80602880-80606869:+
Coord C1 exon
chr10:80602880-80602949
Coord A exon
NA
Coord C2 exon
chr10:80606314-80606869
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCATCTCTGTCTCCCACAGTCG
3' ss Score
10.77
Exon sequences
Seq C1 exon
GCGGTGGCAGGCGTGGCGGCCCGGTTGCTAGGACTTGGATAAGCGTGGCGTTCGCTCGGGTGTCCCTCAG
Seq A exon
NA
Seq C2 exon
TCGAGCCCCGTTGAGGATGGAGCCCACCTCAGGCTTTGCAGAGCAACCTGGGCCTGTGAAGGCTGAAAGTGAGGAGCAAGAGCCGGCGCAATGGCAAGCCCTCCCTGTCCTGTCGGAGCAGCAGTCGGGGGCCGTGGAGCTGATACTGGCCTATGCTGCACCTGTCCTGGACAAGCGCCAGACGTCCCGCCTCCTCCGGGAGGTGTCTGCTGTCTATCCACTTCCTGCCCAGCCCCACCTCAAGCGGGTGCGCCCCAGCCGCAGTGCAGGAGGTGCACAGTCATCGGATCTGCTGCTGTGCTTGGCAGGGCCCTCCGCGGGCCCGCGCTCTCTGGCGGAGCTCCTTCCCAGGCCGGCCGTGGACCCACGTGGCCTGGGCACACCTTTCCTGGTGCCTGTGCCTGCCCGGCCGCCCCTCACCCGAAGCCAGTTTGAGGAGGCACGAGCCCACTGGCCTACATCCTTCCATGAAGACAAGCAGGTGACCAGTGCTCTGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035370-0-4,0-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0038317=dCMP_cyt_deam_1=WD(100=39.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGGATAAGCGTGGCGTTC
R:
ATAGACAGCAGACACCTCCCG
Band lengths:
255-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types