MmuEX0041141 @ mm10
Exon Skipping
Gene
ENSMUSG00000035370 | Adat3
Description
adenosine deaminase, tRNA-specific 3 [Source:MGI Symbol;Acc:MGI:1924344]
Coordinates
chr10:80602880-80608850:+
Coord C1 exon
chr10:80602880-80602949
Coord A exon
chr10:80606314-80606869
Coord C2 exon
chr10:80608803-80608850
Length
556 bp
Sequences
Splice sites
3' ss Seq
TCCATCTCTGTCTCCCACAGTCG
3' ss Score
10.77
5' ss Seq
GCGGTATGT
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCGGTGGCAGGCGTGGCGGCCCGGTTGCTAGGACTTGGATAAGCGTGGCGTTCGCTCGGGTGTCCCTCAG
Seq A exon
TCGAGCCCCGTTGAGGATGGAGCCCACCTCAGGCTTTGCAGAGCAACCTGGGCCTGTGAAGGCTGAAAGTGAGGAGCAAGAGCCGGCGCAATGGCAAGCCCTCCCTGTCCTGTCGGAGCAGCAGTCGGGGGCCGTGGAGCTGATACTGGCCTATGCTGCACCTGTCCTGGACAAGCGCCAGACGTCCCGCCTCCTCCGGGAGGTGTCTGCTGTCTATCCACTTCCTGCCCAGCCCCACCTCAAGCGGGTGCGCCCCAGCCGCAGTGCAGGAGGTGCACAGTCATCGGATCTGCTGCTGTGCTTGGCAGGGCCCTCCGCGGGCCCGCGCTCTCTGGCGGAGCTCCTTCCCAGGCCGGCCGTGGACCCACGTGGCCTGGGCACACCTTTCCTGGTGCCTGTGCCTGCCCGGCCGCCCCTCACCCGAAGCCAGTTTGAGGAGGCACGAGCCCACTGGCCTACATCCTTCCATGAAGACAAGCAGGTGACCAGTGCTCTGGCCGGGCAACTCTTCTCCACGCAGGAGCGAGCTGCCATGCAAACCCACATGGAACGGGCG
Seq C2 exon
GTGGCCCCTTCTGCCTGGGTGCCAGGTCAGCTGATACAGAAATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035370_MULTIEX1-2/6=C1-3
Average complexity
C1*
Mappability confidence:
89%=100=89%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0038317=dCMP_cyt_deam_1=WD(100=39.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types