MmuALTA1027225-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035370 | Adat3
Description
adenosine deaminase, tRNA-specific 3 [Source:MGI Symbol;Acc:MGI:1924344]
Coordinates
chr10:80602880-80606869:+
Coord C1 exon
chr10:80602880-80602949
Coord A exon
chr10:80606139-80606313
Coord C2 exon
chr10:80606314-80606869
Length
175 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGACCACGTGGCCTCGTCAGAGC
3' ss Score
1.15
Exon sequences
Seq C1 exon
GCGGTGGCAGGCGTGGCGGCCCGGTTGCTAGGACTTGGATAAGCGTGGCGTTCGCTCGGGTGTCCCTCAG
Seq A exon
AGCCCTGAAGAGCCCGGCACGATTATTCCTTATGCGGCCGGGGAATAAGCCAACTCTACCTGGCGCTCTGGACTCCTCATTCCTGGGCCTGGCGGGACCCACCACATCCCAGGACAGACCCCCGCCCCACTGAAGCTGACGGATGATGCTCCAGTTCCATCTCTGTCTCCCACAG
Seq C2 exon
TCGAGCCCCGTTGAGGATGGAGCCCACCTCAGGCTTTGCAGAGCAACCTGGGCCTGTGAAGGCTGAAAGTGAGGAGCAAGAGCCGGCGCAATGGCAAGCCCTCCCTGTCCTGTCGGAGCAGCAGTCGGGGGCCGTGGAGCTGATACTGGCCTATGCTGCACCTGTCCTGGACAAGCGCCAGACGTCCCGCCTCCTCCGGGAGGTGTCTGCTGTCTATCCACTTCCTGCCCAGCCCCACCTCAAGCGGGTGCGCCCCAGCCGCAGTGCAGGAGGTGCACAGTCATCGGATCTGCTGCTGTGCTTGGCAGGGCCCTCCGCGGGCCCGCGCTCTCTGGCGGAGCTCCTTCCCAGGCCGGCCGTGGACCCACGTGGCCTGGGCACACCTTTCCTGGTGCCTGTGCCTGCCCGGCCGCCCCTCACCCGAAGCCAGTTTGAGGAGGCACGAGCCCACTGGCCTACATCCTTCCATGAAGACAAGCAGGTGACCAGTGCTCTGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035370-0-4,0-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0038317=dCMP_cyt_deam_1=WD(100=39.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGGATAAGCGTGGCGTTC
R:
ATAGACAGCAGACACCTCCCG
Band lengths:
255-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types