MmuALTA1027329-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035513 | Ntng2
Description
netrin G2 [Source:MGI Symbol;Acc:MGI:2159341]
Coordinates
chr2:29248788-29253005:-
Coord C1 exon
chr2:29252950-29253005
Coord A exon
NA
Coord C2 exon
chr2:29248788-29248828
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
TTTTCTCTTCACAATGAAAGCCA
3' ss Score
1.67
Exon sequences
Seq C1 exon
CAGAGGAAGTTACGCAGCCCGGATCAGACCGGGAGATAAAAGCCCCGATGGTGACC
Seq A exon
NA
Seq C2 exon
CCAAGCCTGAGCCCAGGTACCTGGATGAAGTGAGAGTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035513-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGAAGTTACGCAGCCC
R:
ACTCTCACTTCATCCAGGTACCT
Band lengths:
93-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types