MmuALTD1022443-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000079499 | 6530402F18Rik
Description
RIKEN cDNA 6530402F18 gene [Source:MGI Symbol;Acc:MGI:1923470]
Coordinates
chr2:29251347-29252364:-
Coord C1 exon
chr2:29252323-29252364
Coord A exon
chr2:29252259-29252322
Coord C2 exon
chr2:29251347-29252040
Length
64 bp
Sequences
Splice sites
5' ss Seq
GGGGTGTGT
5' ss Score
3.14
3' ss Seq
GTCTCCTCTGGGCTCTAAAGGCG
3' ss Score
4
Exon sequences
Seq C1 exon
TTCTCCCCGGACCAGGGAGTCACTCGGAGCCTCCTAGCCGAG
Seq A exon
GTTCGGACGCAAAGTTATCTGGTGGCGGCTGCTACTAAAGGAGGGCTGGAGCCGCGGAAGAGGG
Seq C2 exon
GCGCAAGGAGAACTCTTGGCCAGTCAGGTTAGAAACTTCTTTCGGTGCTGTGGAGGGGGTCGGCAGGCGGAGAAGGGGGCTCCACCACCGTGGAGAGTCGCACTCCAGGGAGAGCAAAGACGGGAAGTGGACCTCCAGATCTCGGGTCCGCCCGTTTCGGAGTAAGTTGCGGGTCTTTGCTGGGGGATGGCGGCGACAGGGTCTCCGCGGAGCAGCGCCGGGAAAAAGAATGCGAATAATTCCCTGGAGCTTTGCTCGGTGTCTTTTAATTAAGGGAGGCGATGTCAAATGAGGGGGCAGCCTGGATGCTAGCCTGGCCTTTATTAAAGGCGTGATTATTAATTGCGCCGGTGGTTTGCACCGAACTTCGGAAAGGCAAAACGCAGCGGCGGTTTGTGCTCTATGTGCGGTGCACGCCACTGTCTACGCGCCCGAGCTCAGCGCGGACTCAGCCAGACTCCTGGGTGTCTGCGGGCCTCAGGCTAGCCCCGCCCGTCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079499-1-2,2-2,3-2-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCACTCGGAGCCTCCTAG
R:
GTCTTTGCTCTCCCTGGAGTG
Band lengths:
147-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types