MmuALTD1022443-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000079499 | 6530402F18Rik
Description
RIKEN cDNA 6530402F18 gene [Source:MGI Symbol;Acc:MGI:1923470]
Coordinates
chr2:29251347-29252364:-
Coord C1 exon
chr2:29252323-29252364
Coord A exon
chr2:29252224-29252322
Coord C2 exon
chr2:29251347-29252040
Length
99 bp
Sequences
Splice sites
5' ss Seq
GAAGTAGAG
5' ss Score
-4.75
3' ss Seq
GTCTCCTCTGGGCTCTAAAGGCG
3' ss Score
4
Exon sequences
Seq C1 exon
TTCTCCCCGGACCAGGGAGTCACTCGGAGCCTCCTAGCCGAG
Seq A exon
GTTCGGACGCAAAGTTATCTGGTGGCGGCTGCTACTAAAGGAGGGCTGGAGCCGCGGAAGAGGGGTGTGTGTGCGCGCCGGGTGCAGCATCTTTAAGAA
Seq C2 exon
GCGCAAGGAGAACTCTTGGCCAGTCAGGTTAGAAACTTCTTTCGGTGCTGTGGAGGGGGTCGGCAGGCGGAGAAGGGGGCTCCACCACCGTGGAGAGTCGCACTCCAGGGAGAGCAAAGACGGGAAGTGGACCTCCAGATCTCGGGTCCGCCCGTTTCGGAGTAAGTTGCGGGTCTTTGCTGGGGGATGGCGGCGACAGGGTCTCCGCGGAGCAGCGCCGGGAAAAAGAATGCGAATAATTCCCTGGAGCTTTGCTCGGTGTCTTTTAATTAAGGGAGGCGATGTCAAATGAGGGGGCAGCCTGGATGCTAGCCTGGCCTTTATTAAAGGCGTGATTATTAATTGCGCCGGTGGTTTGCACCGAACTTCGGAAAGGCAAAACGCAGCGGCGGTTTGTGCTCTATGTGCGGTGCACGCCACTGTCTACGCGCCCGAGCTCAGCGCGGACTCAGCCAGACTCCTGGGTGTCTGCGGGCCTCAGGCTAGCCCCGCCCGTCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079499-1-2,2-2,3-2-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCACTCGGAGCCTCCTAG
R:
CCGAGATCTGGAGGTCCACTT
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types