MmuALTA1028304-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036770 | Stpg3
Description
sperm tail PG rich repeat containing 3 [Source:MGI Symbol;Acc:MGI:1921722]
Coordinates
chr2:25213299-25214142:-
Coord C1 exon
chr2:25213831-25214142
Coord A exon
chr2:25213528-25213583
Coord C2 exon
chr2:25213299-25213527
Length
56 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
AGCGTCCTGACTCTTCATAGTGG
3' ss Score
5.1
Exon sequences
Seq C1 exon
GGCTCGAGAGACGTCCTCCAATCCTGATGGACCTGGATGTCCCTGGCCCAGCCCAGTACGAGGTGCCCAATATGTCTCTGCGAGAGGCCTCTCCACACCCCCAATACACCATCGGTCGCAAGTACCCGGTTCGAGGTGCATGCCCCCACAACCCTGCCTGTACTGGGGGAATGGGAACCTCTTGCCCTGAAAACCTCCCCACCGACCATCCGCCCCACTGCAGAGGGTGGTGGCCGCAGGGCATGGCAGACCATGTGGCTCCAAAGTGAAAGCCCCTTCATGCAGAAGACCGACTTCAACCGAGAGACAAAG
Seq A exon
TGGCCATCACCCGCCGAGTACACGCCGCTGAGCCAGCCTGCCTTCCCGGCCTTCAG
Seq C2 exon
CTTTGGAGACCGCCATCGCTCTGTTGTCAAAATGCCGGAGAGTCGCTTCCGCCCAGGGATGCTCCGAGCCCGAGGTCCTTGTAGCTATACCCCACTCTTGCCTACCTCAAAGCCCTCTGGCGAGAAGCGACCCAGCCCCAACACCTATAACATCCTTCCTGGGTACCGTCTGCAGAGCACACGCTCACCTGCCTTCTCCATGAGCCGGTCTCCTGCGTTTGCATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036770-5-8,5-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.394
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGACTTCAACCGAGAGACA
R:
AGGGCTTTGAGGTAGGCAAGA
Band lengths:
140-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types