RnoALTA0039082-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010002 | Stpg3
Description
sperm-tail PG-rich repeat containing 3 [Source:RGD Symbol;Acc:1561978]
Coordinates
chr3:2432941-2433569:-
Coord C1 exon
chr3:2433481-2433569
Coord A exon
chr3:2433170-2433225
Coord C2 exon
chr3:2432941-2433169
Length
56 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
AGCGTCCTGACTCTTCATAGTGG
3' ss Score
5.1
Exon sequences
Seq C1 exon
AGGGTGGTGGCCGCAGGGCATGGCAGACCATGTGGCTCCAGAGTGAAAGCCCCTTCACACAGAAGACTGACTTCAACCGAGAGACAAAG
Seq A exon
TGGCCATCGCCTGCCGAGTACACGCCGTTGAGTCAGCCTGCCTTCCCGGCCTTCAG
Seq C2 exon
CTTTGGAAGCCGCCGTCGCTCTTCGGCCAAAATACCTGAGAGGCATTTCCGCCCGGGGATGCTCCGAGCCCGAGGTCCTTGTAACTATACCCCACTCTTGGCTACCTCAAAGCCCTCTGGCGAGAAGCGACCCGGCCCCAACACCTATAACATCTTTCCTGGGTGCCGTCTGCAGAGCACACGCTCACCCGCCTTCTCCATGAGCCGCTCTCCTGCGTTTGCATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010002-5-6,5-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGTGAAAGCCCCTTCA
R:
AGTTACAAGGACCTCGGGCTC
Band lengths:
139-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]