MmuALTA1035231-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000047036 | Zfp445
Description
zinc finger protein 445 [Source:MGI Symbol;Acc:MGI:2143340]
Coordinates
chr9:122861796-122866006:-
Coord C1 exon
chr9:122865914-122866006
Coord A exon
NA
Coord C2 exon
chr9:122861796-122862259
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
GTTGTTCATTCTTTTACCAGTGA
3' ss Score
6.9
Exon sequences
Seq C1 exon
GTACTTCCGCTCTCGCAGAGAGGCCCGCGGAGGAAGTGGGCCCTGGGAGCGAACAGCCATTAGGAAGAATGCTGAGTGCTCCGGCGTGAGTCG
Seq A exon
NA
Seq C2 exon
TGACTTCTGATGACCTAGCAAATAATGCCACACACTGCAATACTGTGAAGACACTCGCAAGGATACAGCAGTGATTTAGTGAAAGCAACAGATTTCTTTTGTGTTCATCTGTGTGACCCTGGATAGGAGTGATGCCTCCAGGCAGGTGGCATGCTGCCCGCTCAGCTCAGGTGTCAAGGGAACAAGGCTGCCTTCGAATGGTAAAAGAAGAGGAGGAGGATGGCTATATTTCAATGCAGACTGCCAGGCCACAGACACTTAACCGCCCTGGCCAGGAGCTATTCCGTCAGCTCTTTAGACAGCTTCGCTATCATGAATCTTCTGGGCCCCTAGAAACTCTGAGCCGGCTCCAGGAGCTCTGCCGCTGGTGGATGAGGCCTGATGTTCTTTCAAAAGCACAGATGTTAGAGTTGTTGGTCTTGGAGCAATTCCTGAGCATCTTGCCTGGAGAGCTCCGGACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047036-0-2,0-1,0-0-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.121
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=WD(100=67.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAATGCTGAGTGCTCCG
R:
GGCATCACTCCTATCCAGGGT
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types