MmuALTA1035231-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000047036 | Zfp445
Description
zinc finger protein 445 [Source:MGI Symbol;Acc:MGI:2143340]
Coordinates
chr9:122861796-122866006:-
Coord C1 exon
chr9:122865914-122866006
Coord A exon
chr9:122862260-122862344
Coord C2 exon
chr9:122861796-122862259
Length
85 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
CATTTTCTTGTCTCTTCTAGGAC
3' ss Score
12.82
Exon sequences
Seq C1 exon
GTACTTCCGCTCTCGCAGAGAGGCCCGCGGAGGAAGTGGGCCCTGGGAGCGAACAGCCATTAGGAAGAATGCTGAGTGCTCCGGCGTGAGTCG
Seq A exon
GACTGAGCTCAATCATGTGTGCGGATATCATTTTCTTGTCTCTTCTTTTCTGAACATCAGTGTTGGTTGTTCATTCTTTTACCAG
Seq C2 exon
TGACTTCTGATGACCTAGCAAATAATGCCACACACTGCAATACTGTGAAGACACTCGCAAGGATACAGCAGTGATTTAGTGAAAGCAACAGATTTCTTTTGTGTTCATCTGTGTGACCCTGGATAGGAGTGATGCCTCCAGGCAGGTGGCATGCTGCCCGCTCAGCTCAGGTGTCAAGGGAACAAGGCTGCCTTCGAATGGTAAAAGAAGAGGAGGAGGATGGCTATATTTCAATGCAGACTGCCAGGCCACAGACACTTAACCGCCCTGGCCAGGAGCTATTCCGTCAGCTCTTTAGACAGCTTCGCTATCATGAATCTTCTGGGCCCCTAGAAACTCTGAGCCGGCTCCAGGAGCTCTGCCGCTGGTGGATGAGGCCTGATGTTCTTTCAAAAGCACAGATGTTAGAGTTGTTGGTCTTGGAGCAATTCCTGAGCATCTTGCCTGGAGAGCTCCGGACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047036-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.121
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=WD(100=67.9)
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAATGCTGAGTGCTCCG
R:
GGCATCACTCCTATCCAGGGT
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types