MmuALTD1042826-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000047036 | Zfp445
Description
zinc finger protein 445 [Source:MGI Symbol;Acc:MGI:2143340]
Coordinates
chr9:122844529-122866014:-
Coord C1 exon
chr9:122865914-122866014
Coord A exon
chr9:122865737-122865913
Coord C2 exon
chr9:122844529-122862344
Length
177 bp
Sequences
Splice sites
5' ss Seq
CACGTAGGT
5' ss Score
6.85
3' ss Seq
CATTTTCTTGTCTCTTCTAGGAC
3' ss Score
12.82
Exon sequences
Seq C1 exon
TCAGAAGCGTACTTCCGCTCTCGCAGAGAGGCCCGCGGAGGAAGTGGGCCCTGGGAGCGAACAGCCATTAGGAAGAATGCTGAGTGCTCCGGCGTGAGTCG
Seq A exon
GTGAGCGGCTGGGAGGTCGGGTGCAGGAGCGGGCGGCGGGGCACAGTTGCGGTGACCTGGCCCGGGCGGCGTCACGGCCCAGGGCGGTTCTGCGGGGAGCGGGACGATCGGAGCGGTGTTGTCCAGCAGTCCGGTGTCCGCCATTATGACTCTCGGTATTCTTGACAAACTCCACAC
Seq C2 exon
GACTGAGCTCAATCATGTGTGCGGATATCATTTTCTTGTCTCTTCTTTTCTGAACATCAGTGTTGGTTGTTCATTCTTTTACCAGTGACTTCTGATGACCTAGCAAATAATGCCACACACTGCAATACTGTGAAGACACTCGCAAGGATACAGCAGTGATTTAGTGAAAGCAACAGATTTCTTTTGTGTTCATCTGTGTGACCCTGGATAGGAGTGATGCCTCCAGGCAGGTGGCATGCTGCCCGCTCAGCTCAGGTGTCAAGGGAACAAGGCTGCCTTCGAATGGTAAAAGAAGAGGAGGAGGATGGCTATATTTCAATGCAGACTGCCAGGCCACAGACACTTAACCGCCCTGGCCAGGAGCTATTCCGTCAGCTCTTTAGACAGCTTCGCTATCATGAATCTTCTGGGCCCCTAGAAACTCTGAGCCGGCTCCAGGAGCTCTGCCGCTGGTGGATGAGGCCTGATGTTCTTTCAAAAGCACAGATGTTAGAGTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047036-0-1,1-1,2-1-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.118
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAATGCTGAGTGCTCCGG
R:
GGCATCACTCCTATCCAGGGT
Band lengths:
251-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types