MmuALTA1042735-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000078627 | March10
Description
membrane-associated ring finger (C3HC4) 10 [Source:MGI Symbol;Acc:MGI:2443469]
Coordinates
chr11:105396949-105408814:-
Coord C1 exon
chr11:105408643-105408814
Coord A exon
NA
Coord C2 exon
chr11:105396949-105397095
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AAAGCTTTTGCACCTTTCAGTGG
3' ss Score
4.51
Exon sequences
Seq C1 exon
AGTTCCTGTGAGGAGGATTCTCGCAGTGAAGCAAGATTATCTACCAAAACATCTTCGGCTAAGTGTGAGCCCAGACTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAAGGCACCATGACACTAAAGAAGTCAGAGAAAGTGAGCCCCAGCAAACCCTCTCCAG
Seq A exon
NA
Seq C2 exon
TGGCACCAAAGATTTTATCAAGGAAGAGGAGACCAAACCTGGGGAGATTGACAGTCAGCCCAGAGATGCACAGCCCAAGAGCATCTGCGGAGAGAAGCAGGCAGAAACCACAGCTGTCGACAAAGGCATCAGGACTCCTGGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078627-14-25,14-24-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=NA C2=0.970
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCATTGACCAAGCATCT
R:
CTCTTGGGCTGTGCATCTCTG
Band lengths:
175-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types