RnoALTA0023268-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007084 | March10
Description
membrane associated ring-CH-type finger 10 [Source:RGD Symbol;Acc:1311692]
Coordinates
chr10:93625761-93638456:-
Coord C1 exon
chr10:93638285-93638456
Coord A exon
NA
Coord C2 exon
chr10:93625761-93625913
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AAAGCTTTTGCACCTTTCAGTGG
3' ss Score
4.51
Exon sequences
Seq C1 exon
AGTTCCGGTGAGGAGGATTCCTTAAGCGAAGCAAGATTAGCTACCAAAGCACCTACAGCTAAGTGTGAGCCCAAACTTCCAGCCATTGATCAAACATCTGTCAAGCAGAAACACAAAGGCACCATGACACTAAAGAAGCCAGAGAAAGTGAGCCCCAGCAAACCCTCTGCAG
Seq A exon
NA
Seq C2 exon
TGGCACAAGCAACAAAGATTTTATCAAGGAAGAGGAGACCAAACCTGGGGAGGTTGACAGTGAGCCCAGAAATGCACAGCCCAAGACTATCTGGGGAGAGAAGCAGGCAGAAAGCACAGCTGTCCACAAAGACATCAGGACTCCTGGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007084-19-33,19-32-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCAGAGAAAGTGAGCCC
R:
TCCCCAGATAGTCTTGGGCTG
Band lengths:
135-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]