MmuALTD0002510-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120501303-120502180:+
Coord C1 exon
chr2:120501303-120501324
Coord A exon
chr2:120501325-120501506
Coord C2 exon
chr2:120502103-120502180
Length
182 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTTCCTTTGTGTCCCTATAGCCA
3' ss Score
10.74
Exon sequences
Seq C1 exon
GAAACGAGGGGAAACCCCACAG
Seq A exon
GTTTCTGAGCATGCGGCATGGATGGGGAGTTTAGCTCGTAGTGGCGGCTCTGCTATGCTCTTGGGGTCCTTAGGGGTTATGGTAGCTCTCAGGGGAGGGTCTCTTCAGCACTGTGGGGTTTGGAATTGTCTGCTGACTTTTCCTCCCGGCAAGTTCCTCTGAACTTTGCAGGTATTTCTTGG
Seq C2 exon
CCAAGGCCTGGCCACACAGACCAGGAAAGTGAGGAGCAGCAGCAATTCCGGAACATCTTCAGGCAGATCGCAGGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-48-34,49-34,50-34-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.763 A=NA C2=0.731
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types