MmuALTD0005788-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026867 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:MGI Symbol;Acc:MGI:1913941]
Coordinates
chr2:34725379-34727302:-
Coord C1 exon
chr2:34727216-34727302
Coord A exon
NA
Coord C2 exon
chr2:34725379-34725513
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGA
5' ss Score
3.63
3' ss Seq
ATCTCTTCCTGTTTCAACAGGGC
3' ss Score
11.1
Exon sequences
Seq C1 exon
GTTGGCCGCCTTTTGCAGCAGCTAGCAATGACTGGCACTGAAGAAGGAGATCCCCGGACCAAAAATAGCCTTGGAAAATTTGACAAA
Seq A exon
NA
Seq C2 exon
GGCTGTGTCGCTGCTTTCCTTGATGTTGTAATTGGGGGCCGTGCAGTGGAGACTCCGCCAATGTCCTCTGTTAATCTTCTGGAAGGCTTGAGCAGAACTGTGGTGTATATAAGTTACAGTCAGCTTATTACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026867-22-22,23-22,24-22-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(4.5=31.0)
A:
NA
C2:
PF153241=TALPID3=PU(0.5=2.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTAGCAATGACTGGCACT
R:
CACGGCCCCCAATTACAACAT
Band lengths:
112-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types