RnoALTD0012207-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000017925 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:RGD Symbol;Acc:1307479]
Coordinates
chr3:13796058-13798118:-
Coord C1 exon
chr3:13798032-13798118
Coord A exon
NA
Coord C2 exon
chr3:13796058-13796192
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGA
5' ss Score
3.63
3' ss Seq
ATCTCTTCCTGTTTCAACAGGGC
3' ss Score
11.1
Exon sequences
Seq C1 exon
GTTGGCCGCCTTTTGCAGCAGTTAGCAATGACTGGCACTGAGGAAGGAGATCCCCGGACCAAAAATAGCCTTGGGAAATTTGACAAA
Seq A exon
NA
Seq C2 exon
GGCTGTGTCGCTGCTTTCCTTGATGTCGTAATCGGAGGCCGTGCAGTAGAGACTCCACCAATGTCCTCTGTTAATCTTCTGGAAGGCTTGAGCAGAACTGTGGTGTATATAAGCTACAGTCAGCTTATTACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017925-11-6,12-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(4.5=31.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCCGCCTTTTGCAG
R:
GCTGACTGTAGCTTATATACACCACA
Band lengths:
211-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]