MmuALTD0005789-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026867 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:MGI Symbol;Acc:MGI:1913941]
Coordinates
chr2:34706020-34706832:-
Coord C1 exon
chr2:34706741-34706832
Coord A exon
chr2:34706698-34706740
Coord C2 exon
chr2:34706020-34706139
Length
43 bp
Sequences
Splice sites
5' ss Seq
CCGGTATGT
5' ss Score
9.2
3' ss Seq
TTTTGCTGTATTTTTTAAAGGTA
3' ss Score
9.82
Exon sequences
Seq C1 exon
AGGCTCCAGACTTAAAGCAGGAAGAGCGCCTCCAAGAGCTGGAGAGCTGTTCTGGACTGGGCAGCACATCTGATGATACGGATGTCAGGGAG
Seq A exon
GTCAGTTCCCGCCCCAGCACACCAGGCCTCAGTGTTGTGTCCG
Seq C2 exon
GTATAAGTGCTACATCGGAGGATATTCCCAATAAGATCGAAGACCTGAGATCTGAGTGCAGCTCTGATTTTGGGGGCAAAGATTCTGTAACTAGTCCAGATATGGATGACATAGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026867-46-43,47-43-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTAAAGCAGGAAGAGCGCC
R:
AGCTGCACTCAGATCTCAGGT
Band lengths:
146-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types