RnoALTD0012209-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000017925 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:RGD Symbol;Acc:1307479]
Coordinates
chr3:13777632-13778417:-
Coord C1 exon
chr3:13778326-13778417
Coord A exon
chr3:13778283-13778325
Coord C2 exon
chr3:13777632-13777751
Length
43 bp
Sequences
Splice sites
5' ss Seq
CCGGTATGT
5' ss Score
9.2
3' ss Seq
ATTTTGCTGTATTTTCAAAGGCA
3' ss Score
5.76
Exon sequences
Seq C1 exon
AGGCTCCAGACTTAAAGCAGGAAGAGCGCCTCCAAGAGCTGGAGAGCTGTTCTGGACTGGGCAGTACATCTGATGATACGGATGTCAGGGAG
Seq A exon
GTCAGTTCCCGCCCCAGCACACCAGGCCTCAGTGTTGTGTCCG
Seq C2 exon
GCATAAGCGCTACATCGGAGGATATTCCCAATAAGATCGAAGACCTGCGATCTGAGTGCAGCTCTGATTTTGGGGGTAAAGATTCTGTAACTAGTCCAGATGTGGATGACATAGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017925-27-21,28-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTAAAGCAGGAAGAGCGCC
R:
ACTCAGATCGCAGGTCTTCGA
Band lengths:
140-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]