MmuALTD0007331-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000059742 | Kcnh7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:MGI Symbol;Acc:MGI:2159566]
Coordinates
chr2:62764571-62777681:-
Coord C1 exon
chr2:62777527-62777681
Coord A exon
NA
Coord C2 exon
chr2:62764571-62764770
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
TGTTTTTTTATCCAATCCAGCTC
3' ss Score
7.5
Exon sequences
Seq C1 exon
ACAACGACACTAATTGGTCTTTTGAAGACTGCACGACTCCTGCGTCTTGTGCGCGTAGCCAGGAAACTGGACCGATACTCAGAATATGGTGCGGCTGTTCTAATGCTCTTGATGTGCATATTTGCCCTGATTGCCCACTGGCTGGCTTGCATCTG
Seq A exon
NA
Seq C2 exon
CTCTAATGTATGCGAGCATTTTTGGGAACGTTTCTGCAATTATTCAAAGACTGTACTCAGGAACTGCCAGGTACCACATGCAGATGCTGAGAGTAAAAGAGTTCATTCGCTTCCACCAAATCCCCAACCCTTTGAGGCAACGGCTTGAGGAGTATTTCCAGCATGCATGGACTTACACTAACGGCATAGACATGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059742-23-13,24-13-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(63.3=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(4.8=14.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGACTGCACGACTCCTG
R:
GCTGGAAATACTCCTCAAGCCG
Band lengths:
296-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types