MmuEX6101646 @ mm10
Exon Skipping
Gene
ENSMUSG00000059742 | Kcnh7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:MGI Symbol;Acc:MGI:2159566]
Coordinates
chr2:62764571-62788015:-
Coord C1 exon
chr2:62787590-62788015
Coord A exon
chr2:62777282-62777681
Coord C2 exon
chr2:62764571-62764770
Length
400 bp
Sequences
Splice sites
3' ss Seq
GTACATTTTTATTTCCACAGACA
3' ss Score
8.47
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTCTTTCTTTGGGAGCAGATGTCTTGCCAGAATATAAGCTGCAGACGCCACGCATCAACAAATTTACAATATTGCACTACAGTCCTTTCAAAGCAGTCTGGGATTGGCTTATTTTACTCTTGGTCATTTATACTGCTATATTCACCCCCTACTCTGCAGCATTTCTCCTCAATGACAGAGAGGAACAGAAAAGGCGAGAATGTGGCTATTCTTGTAGCCCTTTGAATGTGGTAGACTTGATTGTGGATATTATGTTTATTATAGACATTCTAATAAACTTCAGAACAACCTATGTAAATCAGAATGAAGAAGTGGTAAGTGATCCTGCCAAAATAGCAATACACTACTTCAAAGGCTGGTTCCTGATTGACATGGTTGCAGCCATTCCTTTTGACTTGCTGATTTTTGGATCAGGTTCTGATGAG
Seq A exon
ACAACGACACTAATTGGTCTTTTGAAGACTGCACGACTCCTGCGTCTTGTGCGCGTAGCCAGGAAACTGGACCGATACTCAGAATATGGTGCGGCTGTTCTAATGCTCTTGATGTGCATATTTGCCCTGATTGCCCACTGGCTGGCTTGCATCTGGTATGCGATTGGGAATGTAGAGAGGCCCTATCTGACTGACAAAATTGGATGGTTGGATTCCTTAGGAACACAAATTGGGAAACGTTACAATGACAGTGACTCGAGTTCTGGACCGTCCATTAAAGACAAATACGTCACGGCACTTTATTTTACCTTCAGCAGTCTAACCAGTGTAGGATTTGGAAATGTGTCTCCTAACACCAATTCGGAGAAAATCTTTTCCATTTGTGTCATGTTGATTGGCT
Seq C2 exon
CTCTAATGTATGCGAGCATTTTTGGGAACGTTTCTGCAATTATTCAAAGACTGTACTCAGGAACTGCCAGGTACCACATGCAGATGCTGAGAGTAAAAGAGTTCATTCGCTTCCACCAAATCCCCAACCCTTTGAGGCAACGGCTTGAGGAGTATTTCCAGCATGCATGGACTTACACTAACGGCATAGACATGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059742-'20-13,'20-11,24-13=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(31.0=45.8)
A:
PF0052026=Ion_trans=FE(63.3=100)
C2:
PF0052026=Ion_trans=PD(4.8=14.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTAGCAACAAATAGTATGGTCCC
R:
TGGCACTTTCATGTCTCAGGT
Band lengths:
302-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types