GgaEX6042559 @ galGal3
Exon Skipping
Gene
ENSGALG00000011082 | KCNH7
Description
NA
Coordinates
chr7:22540418-22553771:+
Coord C1 exon
chr7:22540418-22540843
Coord A exon
chr7:22548176-22548575
Coord C2 exon
chr7:22553572-22553771
Length
400 bp
Sequences
Splice sites
3' ss Seq
TATATCTTTTATTTTTACAGACA
3' ss Score
9.18
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTCTATCCTTAGGGGCTGATGTTCTACCAGAATATAAACTCCAAACACCTCGCATCAACAAGTTTACTATATTGCACTATAGTCCTTTTAAAGCTGTCTGGGACTGGCTAATTTTGTTGCTGGTAATATATACCGCCATATTCACCCCTTATTCTGCTGCCTTCCTTCTGAATGATAGTGAGGAACGGAAGAGAAGAGAGTGTGGATATTCTTGCAGCCCACTGAATGTTGTAGACTTAATTGTGGATATTATGTTTATCATTGACATTCTAATCAACTTCAGAACAACATATGTAAACCAGAATGAAGAAGTGGTAAGTGACCCAGCAAAAATAGCAATTCACTACTTCAAAGGCTGGTTCCTAATTGACATGGTTGCTGCAATACCTTTTGACCTGCTGATTTTTGGCTCTGGCTCTGAAGAG
Seq A exon
ACAACAACATTAATAGGTCTTCTGAAGACAGCTAGACTGCTGCGTTTGGTGAGGGTAGCACGGAAATTGGACAGATATTCAGAATATGGTGCTGCAGTTCTAATGCTCCTTATGTGCATATTTGCACTAATTGCACACTGGCTTGCTTGTATTTGGTATGCCATTGGAAATGTAGAAAGACCTTACTTGGCTCACAAAATTGGCTGGCTGGATTCTTTAGGAGAGCAATTAGGAAAACACTACAATAAGAGTGATGCAAGTTCTGGACCATCCATCAAGGACAAATACGTTACAGCACTTTATTTTACATTCAGCAGTCTGACAAGTGTAGGATTTGGAAATGTTTCTCCAAACACCAACTCAGAGAAAATCTTTTCCATCTGTGTCATGTTGATTGGCT
Seq C2 exon
CATTAATGTATGCGAGTATTTTTGGAAACGTATCTGCAATAATCCAAAGACTCTATTCAGGAACTGCACGATATCACATGCAGATGTTACGAGTAAAGGAGTTTATACGCTTTCATCAAATCCCTAATCCTCTGCGGCAGCGACTTGAGGAATACTTCCAGCACGCATGGACATACACCAATGGCATTGACATGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011082-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=WD(100=36.6),PF0052026=Ion_trans=PU(31.0=45.8)
A:
PF0052026=Ion_trans=FE(63.3=100)
C2:
PF0052026=Ion_trans=PD(4.8=14.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCACTGAATGTTGTAGACT
R:
TGCCGCAGAGGATTAGGGATT
Band lengths:
349-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]