BtaEX6009448 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001899 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr2:34086485-34112277:+
Coord C1 exon
chr2:34086485-34086910
Coord A exon
chr2:34104468-34104867
Coord C2 exon
chr2:34112078-34112277
Length
400 bp
Sequences
Splice sites
3' ss Seq
ATGCACATTTATTTCCACAGACA
3' ss Score
7.88
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTCTCTCTTTAGGAGCAGATGTTCTACCAGAATATAAACTGCAGACACCACGCATCAACAAGTTTACAATATTGCACTACAGCCCTTTCAAGGCCGTCTGGGATTGGCTTATCCTTCTGTTGGTCATATACACTGCTATATTCACTCCCTATTCTGCAGCCTTTCTCCTCAATGACAGAGAAGAACAGAAAAGACGAGAATGTGGCTATTCCTGCAGCCCTTTGAATGTGGTAGACTTGATTGTGGATATTATGTTTATCATAGATATTCTAATCAACTTCAGAACAACATATGTAAATCAGAATGAAGAAGTGGTAAGTGATCCAGCCAAAATAGCAATACACTACTTCAAAGGCTGGTTCCTGATTGACATGGTTGCAGCAATTCCTTTTGACTTGCTGATTTTTGGATCGGGTTCTGATGAG
Seq A exon
ACAACAACATTAATTGGTCTTTTGAAGACAGCTCGACTCCTGCGTCTTGTGAGAGTGGCCCGAAAACTTGATCGATACTCAGAATATGGGGCTGCAGTCCTAATGCTCTTAATGTGCATATTCGCCCTGATTGCTCACTGGCTGGCTTGCATTTGGTATGCCATTGGGAATGTAGAAAGGCCCTACCTGACTGACAAAATCGGCTGGTTGGATTCCTTAGGACAACAAATTGGGAAGCGTTACAATGACAGTGACTCAAGTTCTGGACCATCCATTAAAGATAAATACGTCACAGCACTTTATTTTACCTTCAGCAGTTTAACAAGTGTGGGATTTGGGAATGTGTCTCCTAACACCAATTCGGAGAAAATCTTTTCGATTTGTGTTATGTTGATTGGCT
Seq C2 exon
CATTAATGTATGCAAGCATTTTTGGGAATGTATCTGCAATTATCCAAAGACTATACTCGGGAACTGCCAGGTACCACATGCAGATGCTTCGAGTAAAAGAGTTCATTCGCTTTCACCAAATCCCCAACCCTCTGAGGCAACGGCTTGAAGAATATTTCCAGCACGCATGGACTTACACCAATGGCATTGACATGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001899-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=WD(100=36.6),PF0052026=Ion_trans=PU(31.0=45.8)
A:
PF0052026=Ion_trans=FE(63.3=100)
C2:
PF0052026=Ion_trans=PD(4.8=14.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCAGCCCTTTGAATGTG
R:
AGAGGGTTGGGGATTTGGTGA
Band lengths:
349-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]