DreEX6020644 @ danRer10
Exon Skipping
Gene
ENSDARG00000062687 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr6:10299325-10308097:+
Coord C1 exon
chr6:10299325-10299750
Coord A exon
chr6:10304649-10305048
Coord C2 exon
chr6:10307898-10308097
Length
400 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCACCCTCTCTTTAGACC
3' ss Score
10.63
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTGTTGTCGCTAGGCGCCGATGTGCTTCCCGAGTATAAACTTCAGACGCCCCGCATCAACAAGCTGACCATCTTGCACTACAGCCCCTTTAAGGCGGTCTGGGATTGGCTGATCCTGCTGCTGGTCATCTACACTGCCATTTTCACTCCCTACAGCGCGGCCTTCCTGCTCAATGACCCGGAGGAGGAGAAGAGGCGTGAGTGCGGTTATTCCTGCAGTCCCCTCAATGTGGTGGACCTCATAGTGGACATTATGTTTATCGTAGACATTCTTATCAATTTCCGGACTACGTACATCAACGCCAACGAGGAGGTGGTCAGTCATCCGGCTAAGATAGCAGTGCATTACTTTAAAGGGTGGTTCTTCATAGACATGGTTGCTGCCATACCCTTTGACCTGCTCATATTTGAGGGCGGATCAGATGAG
Seq A exon
ACCACTACTCTGATTGGCCTGTTGAAGACTGCTCGACTGCTCCGATTGGTCCGTGTGGCTCGCAAGCTGGATCGATACTCCGAGTATGGGGCGGCTGTTCTAATGCTCCTCATGTGTATCTTTGCACTGATTGCCCATTGGTTGGCTTGCATATGGTATGCGATCGGCAATGTGGAGAGGCTCTATCTGGACCACACCATTGGCTGGTTGGATAATTTGGGCATATCCATCGGCAAGCAGTACAACATAAGTGATGATGCCTCAGGCCCCTCTATCAGGGACAAGTACGTGACAGCGCTGTATTTCACATTCAGCAGTCTGACCAGTGTGGGCTTCGGAAATGTATCACCAAATACAAACTCAGAGAAGATCTTCTCCATCTGTGTCATGCTCATTGGCT
Seq C2 exon
CTCTGATGTATGCTAGTATCTTCGGGAATGTGTCCGCTATCATTCAGCGATTGTACTCTGGAACAGCTCGGTACCATCTGCAGATGCTTCGGGTCAAAGAATTCATTCGCTTCCATCAGATCCCCAACCCGCTGAGACAAAGACTCGAGGAGTACTTCCAGCACGCTTGGACATACACCAACGGCATCGACATGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062687-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=WD(100=35.2),PF0052026=Ion_trans=PU(31.0=45.8)
A:
PF0052026=Ion_trans=FE(63.3=100)
C2:
PF0052026=Ion_trans=PD(4.8=14.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTGCGGTTATTCCTGCA
R:
GTTGGGGATCTGATGGAAGCG
Band lengths:
358-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]