MmuEX6101646 @ mm9
Exon Skipping
Gene
ENSMUSG00000059742 | Kcnh7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:MGI Symbol;Acc:MGI:2159566]
Coordinates
chr2:62602628-62626072:-
Coord C1 exon
chr2:62625647-62626072
Coord A exon
chr2:62615339-62615738
Coord C2 exon
chr2:62602628-62602827
Length
400 bp
Sequences
Splice sites
3' ss Seq
GTACATTTTTATTTCCACAGACA
3' ss Score
8.47
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTCTTTCTTTGGGAGCAGATGTCTTGCCAGAATATAAGCTGCAGACGCCACGCATCAACAAATTTACAATATTGCACTACAGTCCTTTCAAAGCAGTCTGGGATTGGCTTATTTTACTCTTGGTCATTTATACTGCTATATTCACCCCCTACTCTGCAGCATTTCTCCTCAATGACAGAGAGGAACAGAAAAGGCGAGAATGTGGCTATTCTTGTAGCCCTTTGAATGTGGTAGACTTGATTGTGGATATTATGTTTATTATAGACATTCTAATAAACTTCAGAACAACCTATGTAAATCAGAATGAAGAAGTGGTAAGTGATCCTGCCAAAATAGCAATACACTACTTCAAAGGCTGGTTCCTGATTGACATGGTTGCAGCCATTCCTTTTGACTTGCTGATTTTTGGATCAGGTTCTGATGAG
Seq A exon
ACAACGACACTAATTGGTCTTTTGAAGACTGCACGACTCCTGCGTCTTGTGCGCGTAGCCAGGAAACTGGACCGATACTCAGAATATGGTGCGGCTGTTCTAATGCTCTTGATGTGCATATTTGCCCTGATTGCCCACTGGCTGGCTTGCATCTGGTATGCGATTGGGAATGTAGAGAGGCCCTATCTGACTGACAAAATTGGATGGTTGGATTCCTTAGGAACACAAATTGGGAAACGTTACAATGACAGTGACTCGAGTTCTGGACCGTCCATTAAAGACAAATACGTCACGGCACTTTATTTTACCTTCAGCAGTCTAACCAGTGTAGGATTTGGAAATGTGTCTCCTAACACCAATTCGGAGAAAATCTTTTCCATTTGTGTCATGTTGATTGGCT
Seq C2 exon
CTCTAATGTATGCGAGCATTTTTGGGAACGTTTCTGCAATTATTCAAAGACTGTACTCAGGAACTGCCAGGTACCACATGCAGATGCTGAGAGTAAAAGAGTTCATTCGCTTCCACCAAATCCCCAACCCTTTGAGGCAACGGCTTGAGGAGTATTTCCAGCATGCATGGACTTACACTAACGGCATAGACATGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059742-'10-10,'10-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=WD(100=36.6),PF0052026=Ion_trans=PU(31.0=45.8)
A:
PF0052026=Ion_trans=FE(63.3=100)
C2:
PF0052026=Ion_trans=PD(4.8=14.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTACTCTGCAGCATTTC
R:
ACCTGGCAGTTCCTGAGTACA
Band lengths:
353-753
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: