MmuALTD1032645-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000059742 | Kcnh7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:MGI Symbol;Acc:MGI:2159566]
Coordinates
chr2:62735973-62820342:-
Coord C1 exon
chr2:62800732-62820342
Coord A exon
chr2:62800730-62800731
Coord C2 exon
chr2:62735973-62736178
Length
2 bp
Sequences
Splice sites
5' ss Seq
AGTGTCTTG
5' ss Score
-20.79
3' ss Seq
TTCTTTTGGTTTATTTTTAGGAA
3' ss Score
9.85
Exon sequences
Seq C1 exon
TACTAATGAAGTTTTGTTTGTCCCTGTGATCTATCAATTCATTTTTTAAAATTTTATTAGTTATTTTGTTAATTTACATTTCAAATGTTTTCCCCTTTCCTGGTTTCCCTCTGAAAACCACCTATCCCACCCTCCACCCCCTGTGTCTATGAGGGTGTTCTTCCACCCACCCTCCCACTGCTACCTCACCACCCTCTCGAATTCCCCTGCACTGGGATATCAAGTCTTCACAAGACCAAGGGCCTCTTCTCCCATTGATGCCTGTCAAGGCCATCTCTGGTCCATATGCAGCTGTGGCCATGGGTCCCTCCATGTGTACTATTTTAAATACAAGATTATCTTCTTGTCTACAGGGAATCATCACTTTCGATTTCTCAGAAGCACAAGAACTTCTGATCACACCCCTAGCAACAAATAGTATGGTCCCTCTTCCAGCCCTTCATATGGAATGCTTCAGGCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA
Seq A exon
GT
Seq C2 exon
GAAAAAATGATATCTTTGGGGAAATGGTTCATCTTTATGCCAAACCTGGCAAGTCTAATGCAGATGTGAGAGCACTTACGTACTGTGACCTGCATAAGATTCAGCGAGAAGATTTATTAGAGGTCTTGGATATGTATCCAGAATTTTCTGATCACTTTCTGACAAATCTAGAACTGACTTTCAACCTGAGACATGAAAGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059742-16-22,17-22-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.029
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0002724=cNMP_binding=PD(53.4=68.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCCTTCATATGGAATGCT
R:
AGATGAACCATTTCCCCAAAGA
Band lengths:
103-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types