MmuEX1015630 @ mm10
Exon Skipping
Gene
ENSMUSG00000059742 | Kcnh7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:MGI Symbol;Acc:MGI:2159566]
Coordinates
chr2:62739144-62764770:-
Coord C1 exon
chr2:62764571-62764770
Coord A exon
chr2:62762874-62762876
Coord C2 exon
chr2:62739144-62739396
Length
3 bp
Sequences
Splice sites
3' ss Seq
ACACCCACCGGTAAGAACAGGAG
3' ss Score
-4.29
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
CTCTAATGTATGCGAGCATTTTTGGGAACGTTTCTGCAATTATTCAAAGACTGTACTCAGGAACTGCCAGGTACCACATGCAGATGCTGAGAGTAAAAGAGTTCATTCGCTTCCACCAAATCCCCAACCCTTTGAGGCAACGGCTTGAGGAGTATTTCCAGCATGCATGGACTTACACTAACGGCATAGACATGAACATG
Seq A exon
GAG
Seq C2 exon
GTCTTAAAGGGATTTCCAGAATGTTTACAAGCTGACATTTGCCTGCATCTGAACCAGACTTTGCTACAAAACTGCAAAGCCTTTCGAGGAGCAAGTAAAGGCTGTCTTAGAGCTCTGGCAATGAAGTTCAAAACCACCCATGCCCCTCCAGGAGACACCCTGGTTCACTGTGGGGATGTTCTAACTGCACTGTACTTCTTATCCAGAGGCTCCATTGAAATCCTCAAGGATGATATAGTGGTAGCTATTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059742-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
NO
C2:
PF0002724=cNMP_binding=PU(45.5=47.1)
Main Inclusion Isoform:
ENSMUST00000075052fB11787
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCATGCATGGACTTACACT
R:
GTCTGGTTCAGATGCAGGCAA
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types