HsaEX1018360 @ hg38
Exon Skipping
Gene
ENSG00000184611 | KCNH7
Description
potassium voltage-gated channel subfamily H member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr2:162400189-162423535:-
Coord C1 exon
chr2:162423336-162423535
Coord A exon
chr2:162421613-162421615
Coord C2 exon
chr2:162400189-162400441
Length
3 bp
Sequences
Splice sites
3' ss Seq
ACACCCACCGGTAAGAACAGGAG
3' ss Score
-4.29
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
CACTAATGTATGCAAGCATTTTTGGGAATGTATCTGCAATTATCCAAAGACTATACTCGGGAACTGCCAGGTACCACATGCAGATGCTGCGAGTAAAAGAGTTCATTCGCTTTCACCAAATCCCCAACCCTCTGAGGCAACGTCTTGAAGAATATTTCCAGCACGCATGGACTTACACCAATGGCATTGACATGAACATG
Seq A exon
GAG
Seq C2 exon
GTCCTAAAGGGTTTCCCAGAATGCTTACAAGCAGACATTTGTCTACATCTCAACCAGACATTGCTGCAAAACTGCAAAGCCTTTCGGGGGGCAAGTAAAGGTTGCCTTAGAGCTTTGGCAATGAAGTTCAAAACCACCCATGCACCTCCAGGAGACACCCTCGTTCACTGTGGGGATGTCCTCACTGCACTTTATTTCTTATCCAGAGGCTCCATTGAAATTCTCAAAGATGACATTGTGGTGGCTATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184611-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
NO
C2:
PF0002724=cNMP_binding=PU(45.5=47.1)
Main Inclusion Isoform:
ENST00000332142fB17984
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGCATGGACTTACACCAA
R:
TGCAGCAATGTCTGGTTGAGA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains