RnoEX0046054 @ rn6
Exon Skipping
Gene
ENSRNOG00000007528 | Kcnh7
Description
potassium voltage-gated channel subfamily H member 7 [Source:RGD Symbol;Acc:621112]
Coordinates
chr3:48709624-48736294:-
Coord C1 exon
chr3:48736095-48736294
Coord A exon
chr3:48734391-48734393
Coord C2 exon
chr3:48709624-48709867
Length
3 bp
Sequences
Splice sites
3' ss Seq
ACACCCACCGGTAAGAACAGGAG
3' ss Score
-4.29
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
CTCTAATGTATGCGAGCATTTTTGGGAATGTTTCTGCAATTATTCAAAGACTGTACTCGGGAACTGCCAGGTACCACATGCAGATGCTGAGAGTGAAAGAGTTCATTCGCTTCCACCAAATCCCCAACCCTCTGAGGCAACGGCTTGAGGAGTATTTCCAGCACGCATGGACGTACACTAACGGCATTGACATGAACATG
Seq A exon
GAG
Seq C2 exon
GGATTTCCGGAATGTTTACAAGCTGACATTTGCCTGCATCTAAACCAGACTTTGCTCCAAAACTGCAAAGCCTTTCGAGGAGCAAGTAAAGGTTGCCTCAGAGCTCTGGCAATGAAGTTCAAAACCACCCATGCCCCTCCAGGAGACACCCTGGTTCACTGTGGGGACGTCCTAACTGCACTGTACTTCTTATCCAGAGGCTCCATTGAAATCCTCAAGGATGACATAGTGGTAGCTATTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007528-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
NO
C2:
PF0002724=cNMP_binding=PU(45.5=47.1)
Main Inclusion Isoform:
ENSRNOT00000085246fB7191
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACGGCTTGAGGAGTATT
R:
TGCAGGCAAATGTCAGCTTGT
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]