RnoALTA0020223-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007528 | Kcnh7
Description
potassium voltage-gated channel subfamily H member 7 [Source:RGD Symbol;Acc:621112]
Coordinates
chr3:48709624-48736294:-
Coord C1 exon
chr3:48736095-48736294
Coord A exon
chr3:48709868-48709876
Coord C2 exon
chr3:48709624-48709867
Length
9 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TCTCAATTGTTTCCTTTCAGGTC
3' ss Score
12.08
Exon sequences
Seq C1 exon
CTCTAATGTATGCGAGCATTTTTGGGAATGTTTCTGCAATTATTCAAAGACTGTACTCGGGAACTGCCAGGTACCACATGCAGATGCTGAGAGTGAAAGAGTTCATTCGCTTCCACCAAATCCCCAACCCTCTGAGGCAACGGCTTGAGGAGTATTTCCAGCACGCATGGACGTACACTAACGGCATTGACATGAACATG
Seq A exon
GTCTTAAAG
Seq C2 exon
GGATTTCCGGAATGTTTACAAGCTGACATTTGCCTGCATCTAAACCAGACTTTGCTCCAAAACTGCAAAGCCTTTCGAGGAGCAAGTAAAGGTTGCCTCAGAGCTCTGGCAATGAAGTTCAAAACCACCCATGCCCCTCCAGGAGACACCCTGGTTCACTGTGGGGACGTCCTAACTGCACTGTACTTCTTATCCAGAGGCTCCATTGAAATCCTCAAGGATGACATAGTGGTAGCTATTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007528-8-12,8-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
NA
C2:
PF0002724=cNMP_binding=PU(45.5=48.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACGGCTTGAGGAGTATT
R:
TGCAGGCAAATGTCAGCTTGT
Band lengths:
103-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]