HsaALTA1050844-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000184611 | KCNH7
Description
potassium voltage-gated channel subfamily H member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr2:162400189-162423535:-
Coord C1 exon
chr2:162423336-162423535
Coord A exon
chr2:162400433-162400441
Coord C2 exon
chr2:162400189-162400432
Length
9 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
CTCTTTCTTTTTTTCCTCAGGTC
3' ss Score
12.48
Exon sequences
Seq C1 exon
CACTAATGTATGCAAGCATTTTTGGGAATGTATCTGCAATTATCCAAAGACTATACTCGGGAACTGCCAGGTACCACATGCAGATGCTGCGAGTAAAAGAGTTCATTCGCTTTCACCAAATCCCCAACCCTCTGAGGCAACGTCTTGAAGAATATTTCCAGCACGCATGGACTTACACCAATGGCATTGACATGAACATG
Seq A exon
GTCCTAAAG
Seq C2 exon
GGTTTCCCAGAATGCTTACAAGCAGACATTTGTCTACATCTCAACCAGACATTGCTGCAAAACTGCAAAGCCTTTCGGGGGGCAAGTAAAGGTTGCCTTAGAGCTTTGGCAATGAAGTTCAAAACCACCCATGCACCTCCAGGAGACACCCTCGTTCACTGTGGGGATGTCCTCACTGCACTTTATTTCTTATCCAGAGGCTCCATTGAAATTCTCAAAGATGACATTGTGGTGGCTATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184611-20-27,20-26-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
NA
C2:
PF0002724=cNMP_binding=PU(45.5=47.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGCACGCATGGACTTAC
R:
TGCAGCAATGTCTGGTTGAGA
Band lengths:
104-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains