DreALTA0001918-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000062687 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr6:10307898-10312169:+
Coord C1 exon
chr6:10307898-10308097
Coord A exon
chr6:10311917-10311925
Coord C2 exon
chr6:10311926-10312169
Length
9 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGA
5' ss Score
7.82
3' ss Seq
GTCTCTTCCTCTCTCTGCAGGTA
3' ss Score
14.2
Exon sequences
Seq C1 exon
CTCTGATGTATGCTAGTATCTTCGGGAATGTGTCCGCTATCATTCAGCGATTGTACTCTGGAACAGCTCGGTACCATCTGCAGATGCTTCGGGTCAAAGAATTCATTCGCTTCCATCAGATCCCCAACCCGCTGAGACAAAGACTCGAGGAGTACTTCCAGCACGCTTGGACATACACCAACGGCATCGACATGAACATG
Seq A exon
GTATTGAAG
Seq C2 exon
GGTTTTCCAGAGTGCCTGCAGGCTGATATCTGTCTCCACCTGAATAAAACGTTGCTCCAGAGCTGCAAGGCCTTTCGTGGAGCGACCAAAGGTTGCCTTCGGGCACTGGCGATGCGCTTTAAGACCACCCATGCCCCACCGGGTGACACTCTGGTGCATGGTGGGGATGTTCTCACTGCCCTCTACTTTCTCGCCAGAGGGTCTATCGAGATCCTCAGAGATGACATTGTGGTGGCCATCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062687-11-15,11-14,11-13-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
NA
C2:
PF0002724=cNMP_binding=PU(45.5=47.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGAGACAAAGACTCGAGG
R:
CTGCAGGCACTCTGGAAAACC
Band lengths:
92-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]