MmuALTA1039267-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000059742 | Kcnh7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:MGI Symbol;Acc:MGI:2159566]
Coordinates
chr2:62739144-62764770:-
Coord C1 exon
chr2:62764571-62764770
Coord A exon
chr2:62739378-62739396
Coord C2 exon
chr2:62739144-62739377
Length
19 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TCTCTATTTTTTCCTTTCAGGTC
3' ss Score
13.66
Exon sequences
Seq C1 exon
CTCTAATGTATGCGAGCATTTTTGGGAACGTTTCTGCAATTATTCAAAGACTGTACTCAGGAACTGCCAGGTACCACATGCAGATGCTGAGAGTAAAAGAGTTCATTCGCTTCCACCAAATCCCCAACCCTTTGAGGCAACGGCTTGAGGAGTATTTCCAGCATGCATGGACTTACACTAACGGCATAGACATGAACATG
Seq A exon
GTCTTAAAGGGATTTCCAG
Seq C2 exon
AATGTTTACAAGCTGACATTTGCCTGCATCTGAACCAGACTTTGCTACAAAACTGCAAAGCCTTTCGAGGAGCAAGTAAAGGCTGTCTTAGAGCTCTGGCAATGAAGTTCAAAACCACCCATGCCCCTCCAGGAGACACCCTGGTTCACTGTGGGGATGTTCTAACTGCACTGTACTTCTTATCCAGAGGCTCCATTGAAATCCTCAAGGATGATATAGTGGTAGCTATTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059742-26-21,26-20,26-19-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
NA
C2:
PF0002724=cNMP_binding=PU(45.5=47.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACGGCTTGAGGAGTATT
R:
GTCTGGTTCAGATGCAGGCAA
Band lengths:
105-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types