GgaEX0029154 @ galGal4
Exon Skipping
Gene
ENSGALG00000011082 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr7:20498416-20509038:+
Coord C1 exon
chr7:20498416-20498615
Coord A exon
chr7:20500550-20500552
Coord C2 exon
chr7:20508786-20509038
Length
3 bp
Sequences
Splice sites
3' ss Seq
CCACCCACTGGTAAGAGCAGGAG
3' ss Score
-5.47
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
CATTAATGTATGCGAGTATTTTTGGAAACGTATCTGCAATAATCCAAAGACTCTATTCAGGAACTGCACGATATCACATGCAGATGTTACGAGTAAAGGAGTTTATACGCTTTCATCAAATCCCTAATCCTCTGCGGCAGCGACTTGAGGAATACTTCCAGCACGCATGGACATACACCAATGGCATTGACATGAACATG
Seq A exon
GAG
Seq C2 exon
GTCCTGAAGGGTTTTCCAGAATGCTTACAAGCCGACATTTGCCTGCACCTTAACCAAAATTTGCTTCAGAATTGCAAAGCTTTCCGTGGGGCCAGTAAAGGCTGTCTTCGAGCCTTGGCTATGAAATTTAAGACAACACATGCTCCTCCTGGAGACACTTTAGTGCACTGTGGAGATGTTCTCACTGCTCTTTACTTCGTGTCAAGAGGCTCCATTGAAATTCTTAAGAGTGACATTGTTGTAGCCATTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011082-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
NO
C2:
PF0002724=cNMP_binding=PU(45.5=47.1)
Main Inclusion Isoform:
ENSGALT00000018056fB3721
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGCACGCATGGACATAC
R:
TAAGGTGCAGGCAAATGTCGG
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]